View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2794_low_2 (Length: 551)
Name: NF2794_low_2
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 21 - 541
Target Start/End: Original strand, 53695375 - 53695894
Alignment:
| Q |
21 |
acctaaacatttctcagaactaatcatatgcacaggtttcctcttagctttatagtattgatgaatgtagaataaatgaaagattgttttcacttcaact |
120 |
Q |
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| T |
53695375 |
acctaaacatttctcagaactaatcatatgcacaggtttcctcttagctttataatattgatgaatgaagaataaatgaaagattgttttcacttcaact |
53695474 |
T |
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| Q |
121 |
tcaatacatgcttgtttcaaggagaaactacattcactggctaaaatgattatcactaaacacaacccactttgggagagcnnnnnnnnnnnnncagtac |
220 |
Q |
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| T |
53695475 |
tcaatacatgcttgtttcaaggagaaactacattcactggctaaaatgattatcactaaacacaacccactttgggagagctttttgattttttcagtac |
53695574 |
T |
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| Q |
221 |
tcaatttcctggtctagaatgataatgataagtattttgtgaatgtcaggatcaactaatctactatgattgannnnnnnattaccgttacagttagttt |
320 |
Q |
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| T |
53695575 |
tcaatttcctggtctagaatgataatgataagtattttgtgaatgtcaggatcaactaatctactatgattgatttttt-attaccgttacagttagttt |
53695673 |
T |
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| Q |
321 |
attctgactttacagtgtttgttgtggagagaagtttctaaaaaacatcatggtataatttttgtctatgacaggggattatatatcttggccatattgt |
420 |
Q |
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| T |
53695674 |
attctgactttacagtgtttgttgtggagagaagtttctaaaaaacatcatggtataatttttgtctatgacaggggattatatatcttggccatattgt |
53695773 |
T |
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| Q |
421 |
ttgagagaggtaaatagttgcatgagtttgtagaagaaggaattatggcacacaagttgggacaaaaatacaccggcaacattgcaaaaacactatgttg |
520 |
Q |
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| T |
53695774 |
ttgagagaggtaaatagttgcatgagtttgtagaagaaggaattatggcacacaatttgggacaaaaatacaccggcaacattgcaaaaacactatgttg |
53695873 |
T |
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| Q |
521 |
agaatctggagcatgatgatg |
541 |
Q |
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| T |
53695874 |
agaatctggagcatgatgatg |
53695894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 247 - 441
Target Start/End: Original strand, 53688501 - 53688690
Alignment:
| Q |
247 |
gataagtattttgtgaatgtcaggatcaactaatctactatgattgannnnnnnattaccgttacagttagtttattctgactttacagtgtttgttgtg |
346 |
Q |
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| T |
53688501 |
gataagtattta-tgaatttcaggatcaactaatctgctatgattgattttc--attactgttacggctagtttattttgactttatcgtgtttattgtg |
53688597 |
T |
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| Q |
347 |
gagagaagtttctaaaaaacatcatggtataatttttgtctatgacaggggattatatatcttggccatattgtttgagagaggtaaatagttgc |
441 |
Q |
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| T |
53688598 |
aaga--agtttttaaaaagaatcttggtatactttttgttcatgacaggggattatatatcttggcctgattgtttgagagaggttaatagttgc |
53688690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 541
Target Start/End: Original strand, 53688770 - 53688814
Alignment:
| Q |
497 |
caacattgcaaaaacactatgttgagaatctggagcatgatgatg |
541 |
Q |
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| T |
53688770 |
caacattgcaaaaattctatgttgagaatttggagcatgatgatg |
53688814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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