View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2794_low_21 (Length: 244)
Name: NF2794_low_21
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3684593 - 3684813
Alignment:
| Q |
1 |
cataatttgtttcacactctttccgatacaatttcagattatataagcgttgttgatacactccattaacaaatgaaagtgtttgaagtaaattaaagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3684593 |
cataatttgtttcacactctttccgatacaatttcagattatataagcgttgttgatacactccattaacaaatgaaagtgtttgaagtaaattaaagta |
3684692 |
T |
|
| Q |
101 |
tgaaattcatt--tatattgagttctagattttttattttaaatggaaaaataaagacatgaaatgtaggtaatgttacctttgtcttcttgatagttat |
198 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
3684693 |
tgaaattcgtttatatattgagttctagattttttattttaaatggaaaaataaggacatgaaatgtaggtaatgttacctttg---tcttgataggtat |
3684789 |
T |
|
| Q |
199 |
acaaaggaaattattgggttcttt |
222 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
3684790 |
acaaaggaaattactgggttcttt |
3684813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University