View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2795_high_3 (Length: 478)
Name: NF2795_high_3
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 23856070 - 23855622
Alignment:
| Q |
19 |
tgcagcagcaatgcttgcagcgcgaggtttgaaatagccaaattgttgttcttttgtcggcataatttccttgacgactggatggttgtaaaactcttga |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23856070 |
tgcagcagcaatgcttgcagcgcgagctttgaaatagccaaattgttgttcttttgtcggcataatttccttgacgactggatggttgtaaaactcttga |
23855971 |
T |
|
| Q |
119 |
ctccatttgtgtagcttcggaaatttgtcaccagggaccaactgcaactctgctacttgttggaataatgggatgaagagagcagcaatatccacaaaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23855970 |
ctccatttgtgtagcttcggaaatttgtcaccagggaccaactgcaactctgctacttgttggaataatgggatgaagagagcagcaatatccacaaaac |
23855871 |
T |
|
| Q |
219 |
caatctcttttcttccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactcttctcgcgttccttctcatc |
318 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
23855870 |
caatctcttctcctccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattctttacgactcttctcgcgttctttctcatc |
23855771 |
T |
|
| Q |
319 |
agtgataaaaagagatttcactgcagcagccatacactgattgcacaaataaagttagatagataggaaaataaaactggataagcaaagtttacattta |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23855770 |
agtgataaaaagagatttcactgcagcagccatacactgattgcacaaataaagttagatagataggaaaataaaaccggataagcaaagtttacattta |
23855671 |
T |
|
| Q |
419 |
gtgacatggtaaataaattctagcatggatcacacattaggctgttcat |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23855670 |
gtgacatggtaaataaattctagcatggatcacacattaggctgttcat |
23855622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 9 - 467
Target Start/End: Complemental strand, 23851166 - 23850711
Alignment:
| Q |
9 |
tctactttgatgcagcagcaatgcttgcagcgcgaggtttgaaatagccaaattgttgttcttttgtcggcataatttccttgacgactggatggttgta |
108 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
23851166 |
tctattttgatggagcagcaaggcttgcagcgcgagctttgaaatagccaaattgttgctcttttgaaggcataacttctttgacgactggatggttgta |
23851067 |
T |
|
| Q |
109 |
aaactcttgactccatttgtgtagcttcggaaatttgtcaccagggaccaactgcaactctgctacttgttggaataatgggatgaagagagcagcaata |
208 |
Q |
| |
|
||| ||| |||||||||| |||||||| ||||||||||||||||||| ||| || ||||||||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
23851066 |
aaagtctagactccatttttgtagcttgggaaatttgtcaccagggaacaattgtttctctgctacttcttggaataaagggataaagagagcagcaata |
23850967 |
T |
|
| Q |
209 |
tccacaaaaccaatctcttttcttccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactcttctcgcgtt |
308 |
Q |
| |
|
|||||||| || || |||| || ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
23850966 |
tccacaaagcctatttcttctcctccaaagaacttgtccttcagctcattctcaagaaactgcagagcctcgaataattcttcacgagccttctcgcgct |
23850867 |
T |
|
| Q |
309 |
ccttctcatcagtgataaaaagagatttcactgcagcagccatacactgattgcaca-aataaagttagatagataggaaaataaaactggataagcaaa |
407 |
Q |
| |
|
| |||||||||| ||||||| ||||||| ||||||| | ||||||||||| ||| | |||||||| |||||| |||||||| | || |||| |
|
|
| T |
23850866 |
ctttctcatcaggcataaaaacagatttccatgcagcaatcgtacactgattgaacagattaaagttatatagattagaaaataattcaaga----caaa |
23850771 |
T |
|
| Q |
408 |
gtttacatttagtgacatggtaaataaattctagcatggatcacacattaggctgttcat |
467 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||||| || |||||| |
|
|
| T |
23850770 |
gttcacatttagtgacatggtagataaattctagcatggatcacacattatgcggttcat |
23850711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 23853547 - 23853171
Alignment:
| Q |
19 |
tgcagcagcaatgcttgcagcgcgaggtttgaaatagccaaattgttgttcttttgtcggcataatttccttgacgactggatggttgtaaaactcttga |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23853547 |
tgcagcagcaatgcttgcagcgcgagctttgaaaaatccatgttgttgttcttttgtcggcataatttctttgacgactggatggttgtaaaactcttga |
23853448 |
T |
|
| Q |
119 |
ctccatttgtgtagcttcggaaatttgtcaccagggaccaactgcaactctgctacttgttggaataatgggatgaagagagcagcaatatccacaaaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || |||| | ||||||||||| | ||| ||||| | ||||||| |||||||||||||||||| | |
|
|
| T |
23853447 |
ctccatttgtgtagcttcggaaatttgtcaccggagaacaacagaaactctgctacatcttgaaataaagtgatgaaggaagcagcaatatccacaaagc |
23853348 |
T |
|
| Q |
219 |
caatctcttttcttccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactcttctcgcgttccttctcatc |
318 |
Q |
| |
|
|||||| | || ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||| |
|
|
| T |
23853347 |
taatctcctctcctccaaagaacttgtccttcagctcattctcaagaaactgcagagcctcgaataattcttcgcgagccttctcgcgctctttctcatc |
23853248 |
T |
|
| Q |
319 |
agtgataaaaagagatttcactgcagcagccatacactgattgcacaaa-taaagttagatagataggaaaataaaa |
394 |
Q |
| |
|
| ||||||| ||||||| ||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
23853247 |
cggtataaaaacagatttccatgcagcagccacacactgattgcacaaattaactttagatagatcggaaaataaaa |
23853171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 9 - 368
Target Start/End: Complemental strand, 23838744 - 23838385
Alignment:
| Q |
9 |
tctactttgatgcagcagcaatgcttgcagcgcgaggtttgaaatagccaaattgttgttcttttgtcggcataatttccttgacgactggatggttgta |
108 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
23838744 |
tctattttgatgcagcagcaaggctttcagcgcgagctttgaaatatgcaaattgttgatcttttgaaggcataatttccttgactattggatggttgtt |
23838645 |
T |
|
| Q |
109 |
aaactcttgactccatttgtgtagcttcggaaatttgtcaccagggaccaactgcaactctgctacttgttggaataatgggatgaagagagcagcaata |
208 |
Q |
| |
|
||| |||| ||||||||||| |||||| |||||||| || | | || |||||||||||||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
23838644 |
aaattctttactccatttgtatagctttggaaatttctcccttgtgaacaactgcaactctgctacttcttggaataaagggatgaagagagcggcaata |
23838545 |
T |
|
| Q |
209 |
tccacaaaaccaatctcttttcttccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactcttctcgcgtt |
308 |
Q |
| |
|
|||||||| || || |||| || ||||||||| ||||| || | || ||||||||||||||| ||||||| |||| |||||||| | |||||||||| |
|
|
| T |
23838544 |
tccacaaagccgatttcttgtcctccaaagaatttgtcctttaactcattctcaagaaactgtagagccttcaatagttcttcactagctttctcgcgtt |
23838445 |
T |
|
| Q |
309 |
ccttctcatcagtgataaaaagagatttcactgcagcagccatacactgattgcacaaat |
368 |
Q |
| |
|
| |||| ||||| ||||||| || || ||||||||||| ||||||||| ||||||| |
|
|
| T |
23838444 |
ctttcttatcaggcataaaaaccgacatccatgcagcagccacacactgatttcacaaat |
23838385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 199 - 318
Target Start/End: Original strand, 23860873 - 23860992
Alignment:
| Q |
199 |
agcagcaatatccacaaaaccaatctcttttcttccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactc |
298 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||| |||||| ||||||| ||||||||||| ||||||||||||| | |||||||| | || |
|
|
| T |
23860873 |
agcagcaatatccacaaagttaatctcttctcccccaaagtacttgttcttcagctcattctcaagaatctgcagagcctcggttgattcttcaacattc |
23860972 |
T |
|
| Q |
299 |
ttctcgcgttccttctcatc |
318 |
Q |
| |
|
|||| ||| ||||||||||| |
|
|
| T |
23860973 |
ttctggcgctccttctcatc |
23860992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 23864419 - 23864496
Alignment:
| Q |
199 |
agcagcaatatccacaaaaccaatctcttttcttccaaagaacttgtcattcagcttattctcaagaaactgcagagc |
276 |
Q |
| |
|
||||| ||||||||||||||||||||| | || |||||||||||||| ||||||| |||||| |||| ||||||||| |
|
|
| T |
23864419 |
agcagaaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgcagagc |
23864496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 319
Target Start/End: Original strand, 23843739 - 23843859
Alignment:
| Q |
199 |
agcagcaatatccacaaaaccaatctcttttcttccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactc |
298 |
Q |
| |
|
|||||||||||| ||||| || ||||| || ||||||| ||||||| ||||||| |||||||||||| || ||||||||| | ||||||| | || |
|
|
| T |
23843739 |
agcagcaatatcgacaaagttaaactcttctcctccaaagtacttgtccttcagctcattctcaagaaagtgaagagcctcggttgcttcttcaatattc |
23843838 |
T |
|
| Q |
299 |
ttctcgcgttccttctcatca |
319 |
Q |
| |
|
|||||||| || ||||||||| |
|
|
| T |
23843839 |
ttctcgcgctctttctcatca |
23843859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 23856835 - 23856911
Alignment:
| Q |
203 |
gcaatatccacaaaaccaatctcttttcttccaaagaacttgtcattcagcttattctcaagaaactgcagagcctc |
279 |
Q |
| |
|
||||||||||||| |||||||| | | ||||||||||||||| |||| || ||||||||||| ||| |||||||| |
|
|
| T |
23856835 |
gcaatatccacaattccaatctcctcacctccaaagaacttgtccttcaactcattctcaagaatctgtagagcctc |
23856911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 23840014 - 23840094
Alignment:
| Q |
199 |
agcagcaatatccacaaaaccaatctcttttcttccaaagaacttgtcattcagcttattctcaagaaactgcagagcctc |
279 |
Q |
| |
|
|||||||||||||||||| || ||||| || ||||||| |||| | ||||||| ||||| ||||||||| |||||||| |
|
|
| T |
23840014 |
agcagcaatatccacaaagttaaactcttctcctccaaagtacttacccttcagctcattctgaagaaactgaagagcctc |
23840094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University