View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2795_high_4 (Length: 475)

Name: NF2795_high_4
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2795_high_4
NF2795_high_4
[»] chr6 (25 HSPs)
chr6 (17-458)||(17584700-17585141)
chr6 (293-377)||(32521881-32521965)
chr6 (238-376)||(12767552-12767686)
chr6 (230-379)||(30461427-30461572)
chr6 (271-376)||(2092283-2092384)
chr6 (236-376)||(12409405-12409541)
chr6 (269-377)||(21802549-21802653)
chr6 (322-377)||(31282190-31282245)
chr6 (286-352)||(33275791-33275858)
chr6 (294-377)||(32114352-32114435)
chr6 (322-376)||(3751958-3752012)
chr6 (269-374)||(7448254-7448354)
chr6 (293-377)||(31882454-31882538)
chr6 (301-376)||(28494161-28494236)
chr6 (301-376)||(29806570-29806645)
chr6 (322-377)||(33950831-33950886)
chr6 (333-375)||(3767160-3767202)
chr6 (333-375)||(9241476-9241518)
chr6 (333-375)||(12025613-12025655)
chr6 (235-374)||(14313183-14313318)
chr6 (235-377)||(21847314-21847450)
chr6 (232-293)||(22268499-22268560)
chr6 (334-375)||(25528352-25528393)
chr6 (322-378)||(6937848-6937904)
chr6 (322-377)||(15499440-15499496)
[»] chr5 (31 HSPs)
chr5 (238-377)||(12585598-12585738)
chr5 (269-379)||(19500787-19500898)
chr5 (237-377)||(13279473-13279609)
chr5 (269-375)||(3933925-3934027)
chr5 (293-377)||(14594115-14594199)
chr5 (269-376)||(36762140-36762243)
chr5 (236-374)||(6029447-6029581)
chr5 (293-377)||(4876756-4876840)
chr5 (269-377)||(20183958-20184062)
chr5 (325-379)||(141561-141615)
chr5 (271-377)||(31476386-31476488)
chr5 (269-377)||(8573293-8573397)
chr5 (269-377)||(27979257-27979361)
chr5 (238-374)||(31601491-31601623)
chr5 (269-377)||(36737393-36737497)
chr5 (294-377)||(40026975-40027058)
chr5 (237-375)||(1406182-1406316)
chr5 (235-377)||(15175816-15175954)
chr5 (293-377)||(5138909-5138993)
chr5 (322-374)||(19409152-19409204)
chr5 (293-377)||(20570204-20570288)
chr5 (293-377)||(36742167-36742251)
chr5 (301-384)||(38955497-38955581)
chr5 (333-375)||(20691211-20691253)
chr5 (236-293)||(2074739-2074796)
chr5 (322-371)||(18338138-18338187)
chr5 (266-344)||(31886358-31886432)
chr5 (332-377)||(40956840-40956885)
chr5 (324-376)||(6123871-6123923)
chr5 (266-309)||(15175331-15175375)
chr5 (333-377)||(24624913-24624957)
[»] chr3 (27 HSPs)
chr3 (238-377)||(49765073-49765208)
chr3 (238-375)||(11397584-11397717)
chr3 (269-375)||(54403587-54403689)
chr3 (236-377)||(40036340-40036477)
chr3 (269-387)||(1262425-1262540)
chr3 (238-372)||(13623172-13623301)
chr3 (238-376)||(25480524-25480658)
chr3 (293-377)||(27394299-27394383)
chr3 (286-374)||(48841970-48842058)
chr3 (322-384)||(6296681-6296744)
chr3 (269-377)||(14600405-14600509)
chr3 (233-377)||(48223552-48223692)
chr3 (295-373)||(3541032-3541110)
chr3 (333-375)||(11056494-11056536)
chr3 (322-376)||(30127669-30127723)
chr3 (333-375)||(37183697-37183739)
chr3 (293-377)||(17764905-17764990)
chr3 (293-377)||(19066225-19066310)
chr3 (334-375)||(41865075-41865116)
chr3 (269-379)||(44499986-44500091)
chr3 (237-293)||(1263083-1263139)
chr3 (228-292)||(5984934-5984998)
chr3 (269-377)||(27255313-27255418)
chr3 (271-376)||(30605291-30605392)
chr3 (325-377)||(33978635-33978687)
chr3 (322-377)||(49080034-49080090)
chr3 (261-293)||(54404152-54404184)
[»] chr2 (31 HSPs)
chr2 (237-377)||(31709055-31709196)
chr2 (237-376)||(22298196-22298331)
chr2 (269-377)||(11796755-11796858)
chr2 (271-377)||(34173658-34173760)
chr2 (269-377)||(5790035-5790137)
chr2 (269-346)||(5475109-5475182)
chr2 (271-379)||(37199542-37199646)
chr2 (292-374)||(3045546-3045628)
chr2 (323-379)||(41077569-41077625)
chr2 (322-377)||(31597299-31597354)
chr2 (269-377)||(33146060-33146164)
chr2 (293-380)||(37009601-37009688)
chr2 (294-377)||(43439743-43439826)
chr2 (323-377)||(4437923-4437977)
chr2 (306-376)||(40020157-40020227)
chr2 (271-377)||(28167567-28167669)
chr2 (269-374)||(7939352-7939453)
chr2 (322-377)||(17829663-17829718)
chr2 (322-377)||(37329774-37329829)
chr2 (333-375)||(551923-551965)
chr2 (293-379)||(11564411-11564497)
chr2 (333-379)||(11942100-11942146)
chr2 (333-375)||(16110580-16110622)
chr2 (333-375)||(20893305-20893347)
chr2 (269-380)||(22606924-22607031)
chr2 (271-374)||(40769318-40769416)
chr2 (301-377)||(32023023-32023100)
chr2 (295-375)||(13873932-13874012)
chr2 (295-375)||(14014057-14014137)
chr2 (236-288)||(37198921-37198973)
chr2 (333-384)||(43657517-43657569)
[»] chr1 (25 HSPs)
chr1 (266-379)||(49129618-49129727)
chr1 (237-377)||(45737298-45737434)
chr1 (238-377)||(27225670-27225805)
chr1 (230-374)||(45737986-45738126)
chr1 (258-376)||(10012397-10012511)
chr1 (271-376)||(1114828-1114929)
chr1 (236-371)||(16536364-16536495)
chr1 (293-379)||(28198066-28198152)
chr1 (296-377)||(33126798-33126879)
chr1 (271-346)||(4667518-4667594)
chr1 (237-377)||(25990422-25990558)
chr1 (236-372)||(36604719-36604851)
chr1 (231-293)||(9998023-9998085)
chr1 (235-377)||(7307524-7307664)
chr1 (269-375)||(18406555-18406657)
chr1 (271-377)||(19071739-19071840)
chr1 (271-377)||(19119629-19119730)
chr1 (238-375)||(50143379-50143512)
chr1 (322-377)||(27930843-27930898)
chr1 (325-376)||(29777950-29778001)
chr1 (294-377)||(44648666-44648749)
chr1 (322-372)||(25087375-25087425)
chr1 (294-376)||(36512004-36512086)
chr1 (237-293)||(1846564-1846620)
chr1 (333-377)||(51612411-51612455)
[»] chr4 (28 HSPs)
chr4 (261-376)||(21037316-21037427)
chr4 (235-377)||(51019643-51019781)
chr4 (269-374)||(6711258-6711359)
chr4 (237-377)||(23721996-23722132)
chr4 (295-374)||(35666000-35666079)
chr4 (270-384)||(32448877-32448988)
chr4 (269-376)||(37424393-37424495)
chr4 (296-384)||(7479917-7480005)
chr4 (237-351)||(8138316-8138426)
chr4 (296-377)||(49702987-49703068)
chr4 (269-374)||(25010005-25010106)
chr4 (293-377)||(33046606-33046690)
chr4 (293-377)||(50825230-50825314)
chr4 (301-377)||(54092783-54092859)
chr4 (271-379)||(4949962-4950066)
chr4 (269-377)||(16192260-16192364)
chr4 (238-377)||(20544963-20545098)
chr4 (332-384)||(4963982-4964035)
chr4 (236-374)||(7797561-7797695)
chr4 (333-384)||(796910-796962)
chr4 (333-384)||(26705120-26705171)
chr4 (339-384)||(6232524-6232570)
chr4 (333-375)||(23265721-23265763)
chr4 (274-372)||(17723369-17723463)
chr4 (293-370)||(44664752-44664829)
chr4 (333-384)||(12250770-12250822)
chr4 (333-377)||(19313431-19313475)
chr4 (325-377)||(46076426-46076478)
[»] chr8 (36 HSPs)
chr8 (271-384)||(17564698-17564807)
chr8 (237-362)||(44284310-44284431)
chr8 (269-374)||(34363939-34364039)
chr8 (294-374)||(8443273-8443353)
chr8 (237-372)||(32903609-32903741)
chr8 (271-374)||(14879550-14879649)
chr8 (238-379)||(34925348-34925490)
chr8 (235-376)||(43776941-43777078)
chr8 (274-377)||(24809616-24809716)
chr8 (293-372)||(41262122-41262201)
chr8 (295-377)||(11760012-11760094)
chr8 (325-379)||(39998978-39999032)
chr8 (233-377)||(30354472-30354617)
chr8 (322-375)||(31740096-31740149)
chr8 (269-375)||(36016707-36016808)
chr8 (284-377)||(37872812-37872905)
chr8 (333-377)||(11141006-11141050)
chr8 (323-379)||(13439557-13439612)
chr8 (293-384)||(37266079-37266171)
chr8 (293-377)||(40791094-40791178)
chr8 (322-373)||(4257210-4257261)
chr8 (292-379)||(17734855-17734941)
chr8 (269-377)||(37836947-37837051)
chr8 (274-377)||(3940162-3940261)
chr8 (333-375)||(6293132-6293174)
chr8 (333-375)||(14364396-14364438)
chr8 (237-295)||(40134143-40134201)
chr8 (293-377)||(253571-253656)
chr8 (293-377)||(662202-662287)
chr8 (293-377)||(848000-848085)
chr8 (301-377)||(17496315-17496392)
chr8 (327-376)||(21304579-21304628)
chr8 (236-293)||(29636411-29636468)
chr8 (266-295)||(42198563-42198592)
chr8 (292-377)||(44746221-44746306)
chr8 (237-293)||(14880213-14880269)
[»] chr7 (30 HSPs)
chr7 (241-376)||(3391755-3391886)
chr7 (269-376)||(40401497-40401600)
chr7 (288-377)||(5227893-5227982)
chr7 (295-379)||(23232912-23232996)
chr7 (234-377)||(16425954-16426093)
chr7 (235-374)||(22711626-22711761)
chr7 (269-380)||(27619575-27619682)
chr7 (271-353)||(36688828-36688906)
chr7 (292-377)||(42813067-42813152)
chr7 (322-374)||(48872086-48872138)
chr7 (296-375)||(11696258-11696337)
chr7 (269-377)||(38790098-38790202)
chr7 (322-384)||(26200415-26200477)
chr7 (301-375)||(26902711-26902785)
chr7 (322-379)||(33869890-33869947)
chr7 (239-377)||(46011064-46011198)
chr7 (333-384)||(2146800-2146852)
chr7 (269-349)||(11639922-11639998)
chr7 (269-377)||(29615542-29615646)
chr7 (290-377)||(32387523-32387610)
chr7 (269-377)||(38987778-38987882)
chr7 (301-369)||(23727822-23727887)
chr7 (269-352)||(29736157-29736236)
chr7 (333-375)||(40344374-40344416)
chr7 (293-374)||(8123225-8123305)
chr7 (324-377)||(19332995-19333048)
chr7 (295-376)||(45941500-45941581)
chr7 (333-384)||(29823956-29824008)
chr7 (325-377)||(34834894-34834946)
chr7 (294-374)||(36848445-36848525)
[»] scaffold0159 (1 HSPs)
scaffold0159 (269-377)||(34408-34510)
[»] scaffold0068 (1 HSPs)
scaffold0068 (269-377)||(59286-59390)
[»] scaffold0289 (1 HSPs)
scaffold0289 (269-380)||(3990-4096)
[»] scaffold0003 (2 HSPs)
scaffold0003 (234-377)||(14667-14806)
scaffold0003 (234-377)||(28813-28952)
[»] scaffold0043 (1 HSPs)
scaffold0043 (258-368)||(67730-67836)
[»] scaffold0971 (1 HSPs)
scaffold0971 (322-379)||(3174-3231)
[»] scaffold0189 (1 HSPs)
scaffold0189 (293-377)||(11335-11419)
[»] scaffold0004 (1 HSPs)
scaffold0004 (295-375)||(351316-351396)
[»] scaffold0051 (1 HSPs)
scaffold0051 (324-379)||(11573-11627)
[»] scaffold0067 (1 HSPs)
scaffold0067 (333-375)||(18679-18721)
[»] scaffold0036 (1 HSPs)
scaffold0036 (322-362)||(25295-25335)


Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 17584700 - 17585141
Alignment:
Q  17 cacaatcatcaccagaaactatttgacaatcttcaatcctcacattggtacaagaatctgtataaatggaaaatatatattttacaatctttaaaatatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17584700 cacaatcatcaccagaaactatttgacaatcttcaatcctcacattggtagaagaatctgtataaatggaaaatatatattttacaatctttaaaatatc 17584799  T
Q  117 aaacaagatcactggtaatataatgtagcaccaacacttcacattgaaggcatctcgagtatctgaaaggtgtcggtaacattgacaaatatggttacat 216  Q
    |||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  17584800 aaacaagatagttggtaatacaatgtagcaccaacacttcacattgaaggcatctcgagtgtttgaaaggtgtcggtaacattgacaaatatggttacat 17584899  T
Q  217 aacttacaatcaaatatttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacatt 316  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17584900 aacttacattcaaatatttaagagtaaattacatttctctaccctaagagaagcttgaattacactcccctcccctccctcttgtgttaaaatatacatt 17584999  T
Q  317 ttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctctccctgaaagggaaagattggacggttggtttgtttt 416  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17585000 tttcccccttgaaaggtaaaatttatactcccctcccttatgagatatttgaattacaacctctccctgaaagggaaagattggatggttggtttgtttt 17585099  T
Q  417 gaatcggannnnnnnngtttgagtttgaatttggtttcagtt 458  Q
     |||||||        ||||||||||||||||||||||||||    
T  17585100 taatcggattttttttgtttgagtttgaatttggtttcagtt 17585141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 32521881 - 32521965
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| ||||||||||||||||  || || |||||| ||||||||||||||||| |||| ||| |||||||||||||||||||    
T  32521881 ccctcttatgttaaaatatacattcatttcctttgaaaagtaaaatttatactcccttcccctataagatacttgaattacaacc 32521965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 376
Target Start/End: Complemental strand, 12767686 - 12767552
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaa 337  Q
    |||||||||||| | | ||  |||||| ||||||||||||||||||||||||    |||||| |||||||||||||| ||    |||||||||  |||||    
T  12767686 gagtaaattacactcccctctcctaagagaagcttgaattacactcccctcc----cctcttatgttaaaatatacacttccctcccttgaaaaataaaa 12767591  T
Q  338 tttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||||||| |||||| ||  |||| |||||||||||||    
T  12767590 tttatactctcctcccttaaaagatgcttgaattacaac 12767552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 379
Target Start/End: Original strand, 30461427 - 30461572
Alignment:
Q  230 atatttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaa 329  Q
    ||||| |||||||||| ||| ||| || |||| |  || |||||| ||||||| ||||||||||    || |||||||||||||| || |  ||||||||    
T  30461427 atattgaagagtaaataacacttccctcccctcaaagatgcttgatttacacttccctcccctc----ttatgttaaaatatacacttctctcccttgaa 30461522  T
Q  330 aggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    | |||| || ||||||||| |||| ||| |||||||||||||||||||||    
T  30461523 aagtaatatgtatactcccttcccttataagatacttgaattacaacctc 30461572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 2092384 - 2092283
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    |||||||||||||||||||||||    || | |||||||||||| ||    ||||||||| |||||||||||||||||||||| ||| |||  |||||||    
T  2092384 ttgaattacactcccctcccctc----ttatattaaaatatacacttccatcccttgaaaagtaaaatttatactcccctcccctataagaagcttgaat 2092289  T
Q  371 tacaac 376  Q
    ||||||    
T  2092288 tacaac 2092283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 376
Target Start/End: Original strand, 12409405 - 12409541
Alignment:
Q  236 aagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaa 335  Q
    |||||||||||||| | | || ||||||| ||||||||||| |||||||||||||||||    | |||||||||||||| | |   || |||||| ||||    
T  12409405 aagagtaaattacactcccctcccctaagagaagcttgaatcacactcccctcccctcc----tatgttaaaatatacactctcctccattgaaaagtaa 12409500  T
Q  336 aatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||||||||  | |||| |||||||| ||| |||| ||||    
T  12409501 aatttatacttacatcccttatgagatgcttaaattgcaac 12409541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 21802653 - 21802549
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||| |||||||||    || |||||||||||||| |     ||||||||| |||||||||||||||||||||  ||| |||| |||||    
T  21802653 gcttgaattacactctcctcccctc----ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcctctataagatgcttga 21802558  T
Q  369 attacaacc 377  Q
    |||||||||    
T  21802557 attacaacc 21802549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 31282245 - 31282190
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||    
T  31282245 cccttgaaaagtaaaatttatactcccctcccgtataagatgcttgaattataacc 31282190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 33275791 - 33275858
Alignment:
Q  286 ctcccctcc-ctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcc 352  Q
    ||||||||| ||||| |||||||||||||||||||  ||||||||| |||||||||||| ||||||||    
T  33275791 ctcccctcctctcttatgttaaaatatacatttttctcccttgaaaagtaaaatttatagtcccctcc 33275858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 377
Target Start/End: Complemental strand, 32114435 - 32114352
Alignment:
Q  294 cctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||| |||||||||||||| |  |  ||||||||| ||||||| ||||||||| |||| ||| |||| ||||||||||||||    
T  32114435 cctcttatgttaaaatatacactcctctcccttgaaaagtaaaatgtatactcccttcccttataagatgcttgaattacaacc 32114352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 3751958 - 3752012
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||||||| | |||||||||||||||||||| ||| |||| |||||||||||||    
T  3751958 cccttgaaaagaaaaatttatactcccctcccctataagatgcttgaattacaac 3752012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 7448254 - 7448354
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||| |||    || ||||| ||||||||||||||||||   |||||||||  ||||| ||||||||||||||| ||| | || |||||    
T  7448254 gcttgaattacactctcct----tctctcttatgttaaaatatacattttcctcccttgaaaa-taaaagttatactcccctcccctataaaatgcttga 7448348  T
Q  369 attaca 374  Q
    ||||||    
T  7448349 attaca 7448354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 31882538 - 31882454
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||||| ||||||||| || |  |||||||||  ||||| ||||||||   |||| ||| |||||||||||||||||||    
T  31882538 ccctcttgtgttcaaatatacacttctctcccttgaaaaataaaagttatactcttatcccctataagatacttgaattacaacc 31882454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 28494161 - 28494236
Alignment:
Q  301 tgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    |||||||||||||||  |   ||||||||| ||||||||||||||| | |||| ||| |||| |||||||||||||    
T  28494161 tgttaaaatatacatcctcctcccttgaaaagtaaaatttatactctcatcccctataagatgcttgaattacaac 28494236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 29806570 - 29806645
Alignment:
Q  301 tgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    |||||||||||||||  |   ||||||||| ||||||||||||||| | |||| ||| |||| |||||||||||||    
T  29806570 tgttaaaatatacatcctcctcccttgaaaagtaaaatttatactctcatcccctataagatgcttgaattacaac 29806645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 33950886 - 33950831
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||  ||||||| ||||||||||||| ||| |||| ||||||||||||||    
T  33950886 cccttgaaaaataaaattaatactcccctcccctataagatgcttgaattacaacc 33950831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 3767160 - 3767202
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    |||||||||||||| |||||| ||| |||||||||||||||||    
T  3767160 taaaatttatactctcctcccttataagatacttgaattacaa 3767202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 9241518 - 9241476
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  9241518 taaaatttatactcccctcccttataagatgcttgaattacaa 9241476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 12025613 - 12025655
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  12025613 taaaatttatactcccctcccttataagatgcttgaattacaa 12025655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 374
Target Start/End: Original strand, 14313183 - 14313318
Alignment:
Q  235 taagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggta 334  Q
    ||||||||||||||| | | || |||| |  || |||||||||||| ||| |||||||     || |||||||||||||| ||    |||||||||  ||    
T  14313183 taagagtaaattacactcccctcccctcaaagatgcttgaattacattcctctcccctt----ttatgttaaaatatacacttccctcccttgaaaaata 14313278  T
Q  335 aaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    ||||||| ||||||||||| ||| |||| |||||||||||    
T  14313279 aaatttacactcccctcccctataagatgcttgaattaca 14313318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 377
Target Start/End: Complemental strand, 21847450 - 21847314
Alignment:
Q  235 taagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggta 334  Q
    ||||||||||||||||| | || |  ||||  |||||||||||| |||| |||||||||    || |||||||||||||| ||    || ||| || |||    
T  21847450 taagagtaaattacattccccttc--taagaaaagcttgaattagactctcctcccctc----ttatgttaaaatatacacttccctcctttgcaaagta 21847357  T
Q  335 aaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||||||||||||| || |||||  ||||||| |||||    
T  21847356 aaatttatactcccctcccttaagagatgtttgaattgcaacc 21847314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 22268499 - 22268560
Alignment:
Q  232 atttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctc 293  Q
    ||||||||||| |||||| ||| || |||| |  |||||||||||||||||| |||||||||    
T  22268499 atttaagagtacattacacttcccttccctcaaagaagcttgaattacactctcctcccctc 22268560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 25528393 - 25528352
Alignment:
Q  334 aaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    |||||||||||||||||||| ||| |||| ||||||||||||    
T  25528393 aaaatttatactcccctcccttataagatgcttgaattacaa 25528352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 6937904 - 6937848
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacct 378  Q
    ||||||||| |||||||||||||| | ||| | ||| |||| |||||||||||||||    
T  6937904 cccttgaaaagtaaaatttatactacactctcttataagatgcttgaattacaacct 6937848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 15499496 - 15499440
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccc-tcccgtatgagatacttgaattacaacc 377  Q
    ||||||||| |||| ||||||||||||| |||| ||| |||| ||||||||||||||    
T  15499496 cccttgaaaagtaagatttatactccccatcccctataagatgcttgaattacaacc 15499440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 238 - 377
Target Start/End: Original strand, 12585598 - 12585738
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccc-tcttgtgttaaaatatacattttttccccttgaaaggtaaa 336  Q
    |||||||||||| ||| || ||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||| |||   ||||||||| |||||    
T  12585598 gagtaaattacacttccctcccctaagagatgcttgaattacactcccctcccctcccctcttatgttaaaatatacactttcctcccttgaaaagtaaa 12585697  T
Q  337 atttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||||||| || | |||||| |||||||| |||||    
T  12585698 atttatactccccttccctttgagatgcttgaattgcaacc 12585738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 379
Target Start/End: Original strand, 19500787 - 19500898
Alignment:
Q  269 gcttgaattacactcccctcccctccct-cttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttg 367  Q
    |||||||||||||| |||||| |||||| ||| |||||||||||||| |  |  |||||| || |||||||||||||||||||||| ||| ||||| |||    
T  19500787 gcttgaattacacttccctcctctcccttcttatgttaaaatatacactcctctcccttgcaaagtaaaatttatactcccctcccctataagatatttg 19500886  T
Q  368 aattacaacctc 379  Q
    ||||||||||||    
T  19500887 aattacaacctc 19500898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 377
Target Start/End: Original strand, 13279473 - 13279609
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaa 336  Q
    ||||||||||||| | | || | ||||| ||||||||||||||||| |||||| |||    || ||||||||| |||||| |   ||||||||| |||||    
T  13279473 agagtaaattacactcccctcctctaagagaagcttgaattacacttccctcctctc----ttatgttaaaatctacattctcctcccttgaaaagtaaa 13279568  T
Q  337 atttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||||||||||| ||  |||| ||||||||||||||    
T  13279569 atttatactcccctcccttaaaagatgcttgaattacaacc 13279609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 375
Target Start/End: Complemental strand, 3934027 - 3933925
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||| ||||||||||    || |||||||||||||||||     |||||||| |||||||||||||||||||||| ||| |||| |||||    
T  3934027 gcttgaattacacttccctcccctc----ttatgttaaaatatacatttcccttccttgaaaagtaaaatttatactcccctcccttataagatgcttga 3933932  T
Q  369 attacaa 375  Q
    |||||||    
T  3933931 attacaa 3933925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 14594115 - 14594199
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||| ||    ||||||||| |||||||||||||||||||||| ||| |||| ||||||||||||||    
T  14594115 ccctcttatgttaaaatatacacttccctcccttgaaaagtaaaatttatactcccctcccttataagatgcttgaattacaacc 14594199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 376
Target Start/End: Original strand, 36762140 - 36762243
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||||||    || | |||||||||||| ||    ||||||||| |||||||||||| ||||||||| ||| |||| |||||    
T  36762140 gcttgaattacactcccctcccctc----ttattttaaaatatacacttccctcccttgaaaagtaaaatttatattcccctcccttataagatgcttga 36762235  T
Q  369 attacaac 376  Q
    ||||||||    
T  36762236 attacaac 36762243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 374
Target Start/End: Original strand, 6029447 - 6029581
Alignment:
Q  236 aagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaa 335  Q
    |||||||||||||| ||| || |||| |  || ||||||||||||||| | ||| |||    || ||||||||||||||||||   ||||| ||| ||||    
T  6029447 aagagtaaattacacttccctcccctcaaagatgcttgaattacactctcatcctctc----ttatgttaaaatatacattttcctcccttaaaaagtaa 6029542  T
Q  336 aatttatactcccctcccgtatgagatacttgaattaca 374  Q
    |||||||| ||||||||| ||| |||| |||||||||||    
T  6029543 aatttatattcccctcccctataagatgcttgaattaca 6029581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 4876756 - 4876840
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||||| |   |||||||||  ||||||||||| ||||||||| ||| |||| ||||||||||||||    
T  4876756 ccctcttatgttaaaatatacattctcctcccttgaaaaataaaatttataatcccctcccttataagatgcttgaattacaacc 4876840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 20184062 - 20183958
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||||||    || ||||| |||||||| ||    |||||||||  ||||||||||||||||||||| ||| |||| |||||    
T  20184062 gcttgaattacactcccctcccctc----ttatgttacaatatacacttccctcccttgaaaactaaaatttatactcccctcccctataagatgcttga 20183967  T
Q  369 attacaacc 377  Q
    ||| |||||    
T  20183966 attccaacc 20183958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 141615 - 141561
Alignment:
Q  325 ttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||||| |||||    
T  141615 ttgaaaagtaaaatttatactcccctcccctatgagatgcttgaattactacctc 141561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 31476386 - 31476488
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    |||||||| ||||||||||||||    || |||||||||||||||| |   ||| ||||| ||||||||||||||||| | || ||| |||| |||||||    
T  31476386 ttgaattagactcccctcccctc----ttatgttaaaatatacattctcctcccatgaaaagtaaaatttatactccctttccctataagatgcttgaat 31476481  T
Q  371 tacaacc 377  Q
    |||||||    
T  31476482 tacaacc 31476488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 8573397 - 8573293
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||| |||    |||||||| |||||||||||||| |     || |||||| |||||||||| ||||||||||| ||| |||| |||||    
T  8573397 gcttgaattacactctcct----tccctcttatgttaaaatatacactcccctcctttgaaaagtaaaatttacactcccctcccctataagatgcttga 8573302  T
Q  369 attacaacc 377  Q
    |||||||||    
T  8573301 attacaacc 8573293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 27979257 - 27979361
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||||||||    ||||||| ||||||||||||||||     ||||||||| |||||||| ||||||| ||||| ||| |||| ||| |    
T  27979257 gcttgaattacactcccctc----ccctcttatgttaaaatatacattcccctcccttgaaaagtaaaattaatactcctctcccttataagatgcttaa 27979352  T
Q  369 attacaacc 377  Q
     ||||||||    
T  27979353 cttacaacc 27979361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 374
Target Start/End: Complemental strand, 31601623 - 31601491
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaa 337  Q
    |||||||||||| ||| || |||| |  || ||||||||||||||||||||||||     || | |||||||||| |||| |  || || ||| ||||||    
T  31601623 gagtaaattacacttccctccccttaaagatgcttgaattacactcccctcccctt----ttatattaaaatatatatttctctcctttaaaaagtaaaa 31601528  T
Q  338 tttatactcccctcccgtatgagatacttgaattaca 374  Q
    |||||| ||||||||| ||| |||| |||||||||||    
T  31601527 tttatattcccctcccctataagatgcttgaattaca 31601491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 36737497 - 36737393
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||    |||||| |||||||||||||| ||    |||||||||  ||||||| ||| ||||||||| ||| ||||  ||||    
T  36737497 gcttgaattacactcccctcc----cctcttatgttaaaatatacacttccctcccttgaaaaataaaattaatattcccctcccctataagatgattga 36737402  T
Q  369 attacaacc 377  Q
    |||||||||    
T  36737401 attacaacc 36737393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 40026975 - 40027058
Alignment:
Q  294 cctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||| |||||||||||||| |||   ||||||||| | |||| ||||||||||||||| ||  |||| ||||||||||||||    
T  40026975 cctcttatgttaaaatatacactttcatcccttgaaaagaaaaaattatactcccctcccctagaagatgcttgaattacaacc 40027058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 375
Target Start/End: Complemental strand, 1406316 - 1406182
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaa 336  Q
    ||||||||||||| | | || | ||||| |||||||||||||||||| | || ||||    || |||||||||||||| | |   || ||||||  ||||    
T  1406316 agagtaaattacactccccttctctaagagaagcttgaattacactctcatctcctc----ttatgttaaaatatacactctcctccattgaaaaataaa 1406221  T
Q  337 atttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||| | ||| |||| ||||||||||||    
T  1406220 atttatactcccctcgcctataagatgcttgaattacaa 1406182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 377
Target Start/End: Complemental strand, 15175954 - 15175816
Alignment:
Q  235 taagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggta 334  Q
    ||||||||||||||| | | || ||||||| || ||||||||||||||||||||    || |||| ||||||||||||||  | |  | ||||||| |||    
T  15175954 taagagtaaattacactcccctcccctaagagatgcttgaattacactcccctc----ccttcttatgttaaaatatacacatctctctcttgaaaagta 15175859  T
Q  335 aaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||| ||||||||  |||| | | |||| |||||||| |||||    
T  15175858 aaatctatactcctatcccctttcagatgcttgaattgcaacc 15175816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 5138993 - 5138909
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||| | |   |||| ||||  ||||||||||||||| ||||| ||| |||| ||||||||||||||    
T  5138993 ccctcttatgttaaaatatacactctcctccctcgaaaaataaaatttatactccactcccctataagatgcttgaattacaacc 5138909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 19409204 - 19409152
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    ||||||||| |||||||||||||||||||||| ||| |||| ||| |||||||    
T  19409204 cccttgaaaagtaaaatttatactcccctcccctataagatgcttaaattaca 19409152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 20570204 - 20570288
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| ||||||||||||||||     |||||||||  ||||||| ||||||||||| | ||| |||| ||||||||||||||    
T  20570204 ccctcttatgttaaaatatacattcccctcccttgaaaaataaaattaatactcccctctcctataagatgcttgaattacaacc 20570288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 36742167 - 36742251
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||| |     |||||||||  ||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  36742167 ccctcttatgttaaaatatacactaccctcccttgaaaaataaaatttacactcccctcccttataagatgcttgaattacaacc 36742251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 384
Target Start/End: Complemental strand, 38955581 - 38955497
Alignment:
Q  301 tgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac-ctctccct 384  Q
    ||||||||||||||||  |  ||||||||| ||||||||||||||||| ||||  || ||||  |||||||||||| ||||||||    
T  38955581 tgttaaaatatacattcctctcccttgaaaagtaaaatttatactcccttccctcataagatgtttgaattacaacactctccct 38955497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 20691211 - 20691253
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  20691211 taaaatttatactcccctcccatataagatgcttgaattacaa 20691253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 2074796 - 2074739
Alignment:
Q  236 aagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctc 293  Q
    |||||||||||| | | | || ||||||| ||| ||||||||||||||||||||||||    
T  2074796 aagagtaaattatactccccttccctaagagaaacttgaattacactcccctcccctc 2074739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 18338187 - 18338138
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaatt 371  Q
    ||||||||| |||||| ||||||||||||||| ||| |||| ||||||||    
T  18338187 cccttgaaaagtaaaagttatactcccctcccctataagatgcttgaatt 18338138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 31886432 - 31886358
Alignment:
Q  266 gaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatac 344  Q
    |||| |||||||||||||||||||||||    ||| ||||||||||||||||||  || ||||||  ||||| ||||||    
T  31886432 gaagtttgaattacactcccctcccctc----ttgagttaaaatatacatttttctccgttgaaaaataaaacttatac 31886358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 40956840 - 40956885
Alignment:
Q  332 gtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||||||||||||||||  || |||| ||||||||||||||    
T  40956840 gtaaaatttatactcccctccctcataagatgcttgaattacaacc 40956885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 6123923 - 6123871
Alignment:
Q  324 cttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||||| ||||||| ||||||||| |||| |||  |||||||||||||||||    
T  6123923 cttgaaaagtaaaatgtatactcccatcccctatatgatacttgaattacaac 6123871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 15175331 - 15175375
Alignment:
Q  266 gaagcttgaattacactcccctcccct-ccctcttgtgttaaaat 309  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||    
T  15175331 gaagcttgaattacattcccctcccctcccctcttttgttaaaat 15175375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 24624913 - 24624957
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||||||||||||| | ||| |||| ||||||||||||||    
T  24624913 taaaatttatactcccctctcttataagatgcttgaattacaacc 24624957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 238 - 377
Target Start/End: Complemental strand, 49765208 - 49765073
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaa 337  Q
    |||||||||||| |||||| |||  |  || | |||||||||||||||||||||||    || ||||||||||||||||     ||||||||||||||||    
T  49765208 gagtaaattacacttctctccccgcaaagatgtttgaattacactcccctcccctc----ttatgttaaaatatacattcccctcccttgaaaggtaaaa 49765113  T
Q  338 tttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  49765112 tttatactcccctcccctataagatacttgaattacaacc 49765073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 375
Target Start/End: Original strand, 11397584 - 11397717
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaa 337  Q
    |||||||||||| |||  | ||||||| ||||||||||||||||| ||||||||||    || |||||||||||||| | |   ||||||||| ||||||    
T  11397584 gagtaaattacacttccttcccctaagagaagcttgaattacacttccctcccctc----ttatgttaaaatatacactctcatcccttgaaaagtaaaa 11397679  T
Q  338 tttatactcccctcccgtatgagatacttgaattacaa 375  Q
    |||||||||| ||||| ||| |||| ||||||||||||    
T  11397680 tttatactccactcccctataagatgcttgaattacaa 11397717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 375
Target Start/End: Original strand, 54403587 - 54403689
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||||||    || |||||||||||||| ||    ||||||||| |||||| ||||||||||||||| ||| | ||||||||    
T  54403587 gcttgaattacactcccctcccctc----ttatgttaaaatatacacttccctcccttgaaaagtaaaagttatactcccctcccttataaaatacttga 54403682  T
Q  369 attacaa 375  Q
    |||||||    
T  54403683 attacaa 54403689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 377
Target Start/End: Complemental strand, 40036477 - 40036340
Alignment:
Q  236 aagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaa 335  Q
    |||||||||||||| |   ||||||| |  || |||||||||||| ||||||||||||    || |||||||||||||| |     |||||| || ||||    
T  40036477 aagagtaaattacactctcctaccctcaaagatgcttgaattacattcccctcccctc----ttatgttaaaatatacactcccctcccttgcaaagtaa 40036382  T
Q  336 aatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  40036381 aatttatactcccctcccctataagatacttgaattacaacc 40036340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 387
Target Start/End: Original strand, 1262425 - 1262540
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||||||    || |||||||||||||| | |   | ||||||| |||||||||||||||| ||||| ||| |||| ||||     
T  1262425 gcttgaattacactcccctcccctc----ttatgttaaaatatacactctcctctcttgaaaagtaaaatttatactcctctcccctataagatgcttgc 1262520  T
Q  369 attacaacct-ctccctgaa 387  Q
    |||||||||| |||||||||    
T  1262521 attacaacctcctccctgaa 1262540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 372
Target Start/End: Original strand, 13623172 - 13623301
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaa 337  Q
    |||||||||||| ||| || |||| |  || |||||||||||||| |||||    ||||||| |||||||||||||| ||    |||||||||  |||||    
T  13623172 gagtaaattacacttcactcccctcaaagatgcttgaattacacttccctc----ccctcttatgttaaaatatacacttccctcccttgaaaattaaaa 13623267  T
Q  338 tttatactcccctcccgtatgagatacttgaatta 372  Q
    ||||||| |||||||| ||| ||||||||||||||    
T  13623268 tttatac-cccctcccttataagatacttgaatta 13623301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 376
Target Start/End: Original strand, 25480524 - 25480658
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaa 337  Q
    |||||||||||| || ||| |||| |  || |||||||||| ||||||||||| ||    || |||||||||||||| |||   |||||| || ||||||    
T  25480524 gagtaaattacacttttcttcccttaaagatgcttgaattatactcccctcccatc----ttatgttaaaatatacactttcctcccttgtaaagtaaaa 25480619  T
Q  338 tttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||||| |||||||| ||| |||| ||| |||||||||    
T  25480620 tttatacacccctcccctataagatgcttaaattacaac 25480658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 27394299 - 27394383
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| ||||||||||||||||     ||||| ||| ||||||||||||||| |||| | ||| |||| ||||||||||||||    
T  27394299 ccctcttatgttaaaatatacattcccctcccttaaaaagtaaaatttatactctcctctcttataagatgcttgaattacaacc 27394383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 48842058 - 48841970
Alignment:
Q  286 ctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    ||||||||||| || |||||||||||||| |     ||||| ||| |||||||||||| ||||||||| ||| |||| |||||||||||    
T  48842058 ctcccctcccttttatgttaaaatatacactaccatcccttaaaaagtaaaatttatattcccctcccctataagatgcttgaattaca 48841970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 6296744 - 6296681
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac-ctctccct 384  Q
    ||||| ||| |||||||||||||||||||||| ||| ||||| ||||||| |||| ||||||||    
T  6296744 cccttcaaaagtaaaatttatactcccctcccttataagatatttgaattgcaactctctccct 6296681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 14600405 - 14600509
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||||||||||| |    || |||||||||||||| ||    || |||||| ||||| || ||||||||||||| | |||||| |||||    
T  14600405 gcttgaattacactcccctccccac----ttatgttaaaatatacacttcactcctttgaaaagtaaatttgatactcccctcccttgtgagatgcttga 14600500  T
Q  369 attacaacc 377  Q
    ||| |||||    
T  14600501 atttcaacc 14600509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 377
Target Start/End: Original strand, 48223552 - 48223692
Alignment:
Q  233 tttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaagg 332  Q
    ||||||||||||||||| | | ||  |||||| || ||||||||||||||  ||||    || |||| |||||||||||||| || |  |||| |||| |    
T  48223552 tttaagagtaaattacactcccctcgcctaagagatgcttgaattacactttcctc----ccttcttatgttaaaatatacacttctctccctcgaaaag 48223647  T
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||| ||||||||| |||| | | |||| |||||||| |||||    
T  48223648 taaaatctatactcccatcccctttcagatgcttgaattgcaacc 48223692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 3541110 - 3541032
Alignment:
Q  295 ctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattac 373  Q
    ||||| ||||||||||||||||     ||| ||||| |||||||||||||| ||||||| ||| |||| ||||||||||    
T  3541110 ctcttatgttaaaatatacattcccctcccatgaaaagtaaaatttatactaccctcccctataagatgcttgaattac 3541032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 11056536 - 11056494
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  11056536 taaaatttatactcccctcccttataagatgcttgaattacaa 11056494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 30127669 - 30127723
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||| ||| |||||||||||||||||||||  ||||||||  ||||||||||||    
T  30127669 cccttaaaaagtaaaatttatactcccctcctctatgagatgtttgaattacaac 30127723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 37183739 - 37183697
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    |||||||||||||||||| || ||| |||||||||||||||||    
T  37183739 taaaatttatactccccttccttataagatacttgaattacaa 37183697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 17764990 - 17764905
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccc-tcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||| |     ||||||||| |||| ||||||||||||| |||| ||| |||| ||||||||||||||    
T  17764990 ccctcttatgttaaaatatacactcccctcccttgaaaagtaagatttatactccccctcccctataagatgcttgaattacaacc 17764905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 19066310 - 19066225
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccc-tcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||| |     ||||||||| |||| ||||||||||||| |||| ||| |||| ||||||||||||||    
T  19066310 ccctcttatgttaaaatatacactcccctcccttgaaaagtaagatttatactccccctcccctataagatgcttgaattacaacc 19066225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 41865075 - 41865116
Alignment:
Q  334 aaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    |||||||||||||||||||| ||| |||| ||||||||||||    
T  41865075 aaaatttatactcccctcccttataagatgcttgaattacaa 41865116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 379
Target Start/End: Complemental strand, 44500091 - 44499986
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||    |||||| |||||||||||||| ||    | ||||||| |||||| ||||| || | |||| ||| |||| |||||    
T  44500091 gcttgaattacactcccctcc----cctcttatgttaaaatatacacttccctctcttgaaaagtaaaa-ttataatcacatcccttataagatgcttga 44499997  T
Q  369 attacaacctc 379  Q
    |||||||||||    
T  44499996 attacaacctc 44499986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 1263139 - 1263083
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctc 293  Q
    ||||||||||||||| | || |||| |  || |||||||||||||||||||||||||    
T  1263139 agagtaaattacattcccctcccctcaaagatgcttgaattacactcccctcccctc 1263083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 5984998 - 5984934
Alignment:
Q  228 aaatatttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccct 292  Q
    ||||| |||||||||||||||| | | || |||| |  || ||||||||||||||||||||||||    
T  5984998 aaataattaagagtaaattacactcccctcccctcaaagatgcttgaattacactcccctcccct 5984934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 27255313 - 27255418
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatt-tatactcccctcccgtatgagatacttg 367  Q
    ||||||||||||||| ||||    ||||||| |||||||||||||| |  |  ||||||||| ||||| ||  ||||||||||||| |||||||  ||||    
T  27255313 gcttgaattacactctcctc----ccctcttatgttaaaatatacactcatctcccttgaaaagtaaagttgaatactcccctcccttatgagaagcttg 27255408  T
Q  368 aattacaacc 377  Q
    |||| |||||    
T  27255409 aatttcaacc 27255418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 30605392 - 30605291
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    ||||||||||||||||||| |||    || |||||||||||||| ||    | ||||||  ||||||| || ||||||||||| ||| |||| |||||||    
T  30605392 ttgaattacactcccctccactc----ttatgttaaaatatacacttccctctcttgaatagtaaaatctacactcccctcccctataagatgcttgaat 30605297  T
Q  371 tacaac 376  Q
    ||||||    
T  30605296 tacaac 30605291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 33978635 - 33978687
Alignment:
Q  325 ttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||| ||||||||||||||| |||||| ||| ||||  |||||||||||||    
T  33978635 ttgaaaagtaaaatttatactctcctcccctataagatgtttgaattacaacc 33978687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 377
Target Start/End: Original strand, 49080034 - 49080090
Alignment:
Q  322 cccttgaaaggtaaaatttatact-cccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||| |||| ||||||||| |||||||| ||| |||| ||||||||||||||    
T  49080034 cccttgaaaagtaagatttatactccccctcccctataagatgcttgaattacaacc 49080090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 54404184 - 54404152
Alignment:
Q  261 taagggaagcttgaattacactcccctcccctc 293  Q
    |||| ||||||||||||||||||||||||||||    
T  54404184 taagagaagcttgaattacactcccctcccctc 54404152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 377
Target Start/End: Original strand, 31709055 - 31709196
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccct-ccctcttgtgttaaaatatacattttttccccttgaaaggtaa 335  Q
    ||||||||||||| ||| || ||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||| ||     |||||||| ||||    
T  31709055 agagtaaattacacttccctcccctaagagatgcttgaattacactcccctcccctcccctcttatgttaaaatatacacttcccttccttgaaaagtaa 31709154  T
Q  336 aatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||| |||||| || | |||||| |||||||| |||||    
T  31709155 aatttatattccccttccatttgagatgcttgaattgcaacc 31709196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 376
Target Start/End: Complemental strand, 22298331 - 22298196
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaa 336  Q
    ||||||||||||| | ||||   ||||| ||||||||||||||||||| ||||||||    || |||||||||||||| | ||  |||||||||  ||||    
T  22298331 agagtaaattacactcctctcttctaagagaagcttgaattacactcctctcccctc----ttatgttaaaatatacactcttctcccttgaaaaataaa 22298236  T
Q  337 atttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||||||||||||| | ||| ||||||||||||||||||    
T  22298235 atttatactcccctcgcctataagatacttgaattacaac 22298196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 11796858 - 11796755
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||||||    ||  ||||||||||||||||   | |||||||| |||||||||||||||||||||| ||| |||| |||||    
T  11796858 gcttgaattacactcccctcccctc----ttaagttaaaatatacatttcc-ctccttgaaaagtaaaatttatactcccctcccctataagatgcttga 11796764  T
Q  369 attacaacc 377  Q
    |||||||||    
T  11796763 attacaacc 11796755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 271 - 377
Target Start/End: Complemental strand, 34173760 - 34173658
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    |||||||||||||||||||||||    || ||||||||||||||||     ||||||||| |||||||||||| ||||||||| ||| |||| |||||||    
T  34173760 ttgaattacactcccctcccctc----ttatgttaaaatatacattcccctcccttgaaaagtaaaatttatattcccctcccctataagatgcttgaat 34173665  T
Q  371 tacaacc 377  Q
    |||||||    
T  34173664 tacaacc 34173658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 5790035 - 5790137
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||      |||| ||||||||||||||||  |  |||||||||  ||||||||||||||||||||| ||| |||| |||||    
T  5790035 gcttgaattacactcccctcc------tcttatgttaaaatatacattcctcacccttgaaaaataaaatttatactcccctcccttataagatgcttga 5790128  T
Q  369 attacaacc 377  Q
    ||| |||||    
T  5790129 attgcaacc 5790137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 5475182 - 5475109
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactc 346  Q
    ||||||||||||||| |||||||||    || |||||||||||||||||||| ||| ||||| |||||||||||||||    
T  5475182 gcttgaattacactctcctcccctc----ttatgttaaaatatacatttttttcccctgaaaagtaaaatttatactc 5475109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 379
Target Start/End: Complemental strand, 37199646 - 37199542
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    |||||||||||||||||||||||    || |||||||||||||| |     ||||||||| |||||||||||||||||||||| ||| |||| || ||||    
T  37199646 ttgaattacactcccctcccctc----ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcccctataagatgctcgaat 37199551  T
Q  371 tacaacctc 379  Q
    |||| ||||    
T  37199550 tacatcctc 37199542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 3045628 - 3045546
Alignment:
Q  292 tccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    |||||||| |||||||||||||| ||    | ||||||| |||||||||||||||||||||| ||| |||| |||||||||||    
T  3045628 tccctcttatgttaaaatatacacttccctctcttgaaaagtaaaatttatactcccctcccctataagatgcttgaattaca 3045546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 41077569 - 41077625
Alignment:
Q  323 ccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    |||| ||| |||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  41077569 ccttaaaaagtaaaatttatactcccctcccttataagatgcttgaattacaacctc 41077625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 377
Target Start/End: Original strand, 31597299 - 31597354
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||| |||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  31597299 cccttgaaaagtaaaatttacactcccctcccctataagatgcttgaattacaacc 31597354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 33146060 - 33146164
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||| |||||||||||||||    || |||||||||||||| |     ||||||||| | ||||||||||| |||||||| ||| |||| |||||    
T  33146060 gcttgaattgcactcccctcccctc----ttatgttaaaatatacactcccctcccttgaaaaggaaaatttatacccccctcccctataagatgcttga 33146155  T
Q  369 attacaacc 377  Q
    |||||||||    
T  33146156 attacaacc 33146164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 380
Target Start/End: Complemental strand, 37009688 - 37009601
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctct 380  Q
    ||||||| |||||||||||||| |     ||||||||| |||||||||| ||||||||||| ||| ||||  ||||||||||||||||    
T  37009688 ccctcttatgttaaaatatacactcccctcccttgaaaagtaaaatttacactcccctcccctataagatgtttgaattacaacctct 37009601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 377
Target Start/End: Complemental strand, 43439826 - 43439743
Alignment:
Q  294 cctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||| |||||||||||||| | |   |||||||||  |||||||||||||| |||||| ||| |||| ||||||||||||||    
T  43439826 cctcttatgttaaaatatacactctcctcccttgaaaaataaaatttatactctcctcccttataagatgcttgaattacaacc 43439743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 4437977 - 4437923
Alignment:
Q  323 ccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||| || |||||||||||||||||||||| ||| |||| ||||||||||||||    
T  4437977 ccttgtaaagtaaaatttatactcccctcccttataagatgcttgaattacaacc 4437923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 40020157 - 40020227
Alignment:
Q  306 aaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||||||||||||| |||||||||  |||||||||||||||||| || | ||||||  ||||||| ||||    
T  40020157 aaatatacatttttttcccttgaaaaataaaatttatactccccttccctttgagatgtttgaattgcaac 40020227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 28167567 - 28167669
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    |||||||||||||||||    |||||||| |||||||||||||| | |   ||||| ||| ||||| |||||||| | ||||| ||| |||| |||||||    
T  28167567 ttgaattacactcccct----tccctcttatgttaaaatatacactctcctcccttaaaaagtaaagtttatacttctctcccttataagatgcttgaat 28167662  T
Q  371 tacaacc 377  Q
    |||||||    
T  28167663 tacaacc 28167669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 7939352 - 7939453
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||| |||    |||||||| |||||||||||||| ||    ||||||||| ||||||||||||||| |||  | ||| |||| |||||    
T  7939352 gcttgaattacactctcct----tccctcttatgttaaaatatacacttacctcccttgaaaagtaaaatttatactctcctttcctataagatgcttga 7939447  T
Q  369 attaca 374  Q
    ||||||    
T  7939448 attaca 7939453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 17829718 - 17829663
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||  ||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  17829718 cccttgaaaaataaaatttacactcccctcccttataagatgcttgaattacaacc 17829663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 377
Target Start/End: Original strand, 37329774 - 37329829
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||  ||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  37329774 cccttgaaaaataaaatttatactaccctcccttataagatgcttgaattacaacc 37329829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 551923 - 551965
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  551923 taaaatttatactcccctcccttataagatgcttgaattacaa 551965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 11564497 - 11564411
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    ||||||| |||||||||||||| | |   ||||||||| |||||| |||||||| | |||| ||| |||| ||||||||||| ||||    
T  11564497 ccctcttatgttaaaatatacactctcctcccttgaaaagtaaaacttatactctcatcccctataagatgcttgaattacatcctc 11564411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 11942100 - 11942146
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    ||||||||| ||||||||||| ||| |||| ||||||||||||||||    
T  11942100 taaaatttacactcccctcccttataagatgcttgaattacaacctc 11942146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 16110580 - 16110622
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  16110580 taaaatttatactcccctcccttataagatgcttgaattacaa 16110622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 20893305 - 20893347
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  20893305 taaaatttatactcccctcccttataagatgcttgaattacaa 20893347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 380
Target Start/End: Complemental strand, 22607031 - 22606924
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||||||||  |||    || |||||||||||||| | | | |||| |||| |||||| ||||||||||||| | ||| |||| |||      
T  22607031 gcttgaattacactcccctcttctc----ttatgttaaaatatacactctcttccctagaaaagtaaaacttatactcccctcgcctatcagatgcttat 22606936  T
Q  369 attacaacctct 380  Q
    ||||||||||||    
T  22606935 attacaacctct 22606924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 40769416 - 40769318
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    ||||||||||||||||||     |||||| |||||||||||||| | |   ||||||||| ||||||||||||||  |||||| ||| |||| |||||||    
T  40769416 ttgaattacactcccctc----acctcttatgttaaaatatacactctcctcccttgaaaagtaaaatttatact-acctcccctataagatgcttgaat 40769322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 32023023 - 32023100
Alignment:
Q  301 tgttaaaatatacattttttccccttgaaaggtaaaatttatact-cccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||||||| ||    |||||| || |||||||||||||| |||||||| ||| |||| ||||||||||||||    
T  32023023 tgttaaaatatacacttccctcccttgcaaagtaaaatttatactccccctcccttataagatgcttgaattacaacc 32023100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 375
Target Start/End: Complemental strand, 13874012 - 13873932
Alignment:
Q  295 ctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||| |||||||||||||| |  |  |||||||||  ||||||| ||||||||||||| ||| |||| | ||||||||||    
T  13874012 ctcttatgttaaaatatacactcatctcccttgaaaaataaaattaatactcccctcccttataagatgcatgaattacaa 13873932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 375
Target Start/End: Complemental strand, 14014137 - 14014057
Alignment:
Q  295 ctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||| |||||||||||||| |  |  |||||||||  ||||||| ||||||||||||| ||| |||| | ||||||||||    
T  14014137 ctcttatgttaaaatatacactcatctcccttgaaaaataaaattaatactcccctcccttataagatgcatgaattacaa 14014057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 37198921 - 37198973
Alignment:
Q  236 aagagtaaattacatttctctaccctaagggaagcttgaattacactcccctc 288  Q
    |||||||||||||||||| || |||| |  || ||||||||||||||||||||    
T  37198921 aagagtaaattacatttccctcccctcaaagatgcttgaattacactcccctc 37198973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 43657569 - 43657517
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattac-aacctctccct 384  Q
    ||||||||||||||||||||| ||| |||| ||||| |||| |||||||||||    
T  43657569 taaaatttatactcccctcccttataagatgcttgacttacaaacctctccct 43657517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 379
Target Start/End: Complemental strand, 49129727 - 49129618
Alignment:
Q  266 gaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatact 365  Q
    |||| |||||||||||||||||||||||    || |||||||||||||| | ||  |||||||||  ||||||||||||||||||||| ||| |||| ||    
T  49129727 gaagtttgaattacactcccctcccctc----ttatgttaaaatatacaatcttctcccttgaaaaataaaatttatactcccctcccttataagatgct 49129632  T
Q  366 tgaattacaacctc 379  Q
    ||||||||||||||    
T  49129631 tgaattacaacctc 49129618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 377
Target Start/End: Original strand, 45737298 - 45737434
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaa 336  Q
    ||||||||||||| | |||| |||| |  || |||||||||||||||||||||||||    || |||||||||||||| | |   |||||||||  ||||    
T  45737298 agagtaaattacactcctctcccctcaaagatgcttgaattacactcccctcccctc----ttatgttaaaatatacactctcctcccttgaaaaataaa 45737393  T
Q  337 atttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||||||||||| ||| |||| ||||||||||||||    
T  45737394 atttatactcccctcccttataagattcttgaattacaacc 45737434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 238 - 377
Target Start/End: Original strand, 27225670 - 27225805
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaa 337  Q
    |||||||||||| | | || ||||||| || ||||||||||||||| |||||||||    || |||||||||||||| ||    ||||||||| ||||||    
T  27225670 gagtaaattacaatcccctcccctaagagatgcttgaattacactctcctcccctc----ttatgttaaaatatacacttccctcccttgaaaagtaaaa 27225765  T
Q  338 tttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||||||||| | |||||| |||||||| |||||    
T  27225766 tttatactcccctcccatttgagatgcttgaattgcaacc 27225805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 374
Target Start/End: Original strand, 45737986 - 45738126
Alignment:
Q  230 atatttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaa 329  Q
    |||||| ||||||||||||| | | || |||| |  || ||||||||||||||| |||||||||    || |||||||||||||| ||    ||||| ||    
T  45737986 atattttagagtaaattacactcccctcccctcaaagatgcttgaattacactctcctcccctc----ttatgttaaaatatacacttccctcccttaaa 45738081  T
Q  330 aggtaaaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    | |||||||||||||||||||||| ||| |||| |||||||||||    
T  45738082 aagtaaaatttatactcccctcccctataagatgcttgaattaca 45738126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 376
Target Start/End: Complemental strand, 10012511 - 10012397
Alignment:
Q  258 ccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtat 357  Q
    ||||||| |||||||||||||| || || ||    ||||||| |||||||||||||| ||    ||||||||  |||||||||||||||||||||| |||    
T  10012511 ccctaagagaagcttgaattacccttccatc----ccctcttatgttaaaatatacacttccctcccttgaacagtaaaatttatactcccctcccttat 10012416  T
Q  358 gagatacttgaattacaac 376  Q
     |||| |||||||||||||    
T  10012415 aagatgcttgaattacaac 10012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 1114929 - 1114828
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    |||||||||||||||||||||||    || |||||||||||||| ||||  |||||||||  |||||||||||||| | |||  ||| |||| |||||||    
T  1114929 ttgaattacactcccctcccctc----ttatgttaaaatatacacttttcacccttgaaaaataaaatttatactctcatcctttataagatgcttgaat 1114834  T
Q  371 tacaac 376  Q
    ||||||    
T  1114833 tacaac 1114828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 16536364 - 16536495
Alignment:
Q  236 aagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaa 335  Q
    |||||||||||||| | | || |||| |  || |||||||||||||||||||||||||    || |||||||||||||| |     ||||||||| ||||    
T  16536364 aagagtaaattacactcccctcccctcaaagatgcttgaattacactcccctcccctc----ttatgttaaaatatacactcccctcccttgaaaagtaa 16536459  T
Q  336 aatttatactcccctcccgtatgagatacttgaatt 371  Q
    | || ||||||||||||| |||||||| ||||||||    
T  16536460 atttgatactcccctcccttatgagatgcttgaatt 16536495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 28198152 - 28198066
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    ||||||| |||| ||||||||| | |   |||||||||  ||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  28198152 ccctcttatgtttaaatatacactctcctcccttgaaaaataaaatttatactcccctcccttataagatgcttgaattacaacctc 28198066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 33126879 - 33126798
Alignment:
Q  296 tcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||| |||||||||||||| |||   ||||||||| ||||||||||||||||| |||| | |||||| |||||||| |||||    
T  33126879 tcttatgttaaaatatacactttcctcccttgaaaagtaaaatttatactcccatcccctttgagatgcttgaattgcaacc 33126798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 346
Target Start/End: Complemental strand, 4667594 - 4667518
Alignment:
Q  271 ttgaattacactcccctcccctc-cctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactc 346  Q
    ||||||||||||| | ||||||| |||||| |||||||||||||| | ||  ||||||||| |||||||||||||||    
T  4667594 ttgaattacactctcatcccctctcctcttatgttaaaatatacactcttctcccttgaaaagtaaaatttatactc 4667518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 377
Target Start/End: Original strand, 25990422 - 25990558
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaa 336  Q
    ||||||||||||||| |||| || | |  ||  ||||||||||||| ||||||||||    || |||||||||||||||| |    ||||||||  ||||    
T  25990422 agagtaaattacattcctcttccatcaaagatacttgaattacacttccctcccctc----ttatgttaaaatatacattctccttccttgaaaaataaa 25990517  T
Q  337 atttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| | ||||||| ||| |||| ||||||||||||||    
T  25990518 atttataattccctcccttataagatgcttgaattacaacc 25990558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 372
Target Start/End: Original strand, 36604719 - 36604851
Alignment:
Q  236 aagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaa 335  Q
    |||||||||||||| | | || |||| |  || |||||||||||||||| ||    |||||||| |||||||||||||| ||    || |||||| ||||    
T  36604719 aagagtaaattacactcccctcccctcaaagatgcttgaattacactcctct----tccctcttatgttaaaatatacacttccctcctttgaaaagtaa 36604814  T
Q  336 aatttatactcccctcccgtatgagatacttgaatta 372  Q
    ||||||||||| |||||| ||| |||| |||||||||    
T  36604815 aatttatactctcctcccctataagatgcttgaatta 36604851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 9998085 - 9998023
Alignment:
Q  231 tatttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctc 293  Q
    ||||||||| ||||||||||| | || ||||||| |||||||||||||| || ||||||||||    
T  9998085 tatttaagattaaattacattcccctcccctaagagaagcttgaattacccttccctcccctc 9998023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 377
Target Start/End: Complemental strand, 7307664 - 7307524
Alignment:
Q  235 taagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccc-tcttgtgttaaaatatacattttttccccttgaaaggt 333  Q
    ||||| ||||||||| | | || ||||||| ||  |||||||||||| |   ||||||||| |||| |||||||||||| | ||    ||||||||| ||    
T  7307664 taagaataaattacactcccctcccctaagagatacttgaattacacac---tcccctcccctcttatgttaaaatatataattccctcccttgaaaagt 7307568  T
Q  334 aaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
     ||||||||||||||||||| | |||||| |||||||| |||||    
T  7307567 taaatttatactcccctcccctttgagatgcttgaattgcaacc 7307524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 375
Target Start/End: Original strand, 18406555 - 18406657
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||||||||| |||    || |||||||||||||| |     |||||||||  ||||||||| ||||||||||| ||| |||| |||||    
T  18406555 gcttgaattacactcccctcctctc----ttatgttaaaatatacactaccctcccttgaaaaataaaatttacactcccctcccttataagatgcttga 18406650  T
Q  369 attacaa 375  Q
    |||||||    
T  18406651 attacaa 18406657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 19071739 - 19071840
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    ||||||||||||| |||||||||    || |||||||||||||| |   |||| | |||| |||||||||||||||||||||  ||| |||| |||||||    
T  19071739 ttgaattacactctcctcccctc----ttatgttaaaatatacactccctcccgt-gaaaagtaaaatttatactcccctcctctataagatgcttgaat 19071833  T
Q  371 tacaacc 377  Q
    |||||||    
T  19071834 tacaacc 19071840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 19119629 - 19119730
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    ||||||||||||| |||||||||    || |||||||||||||| |   |||| | |||| |||||||||||||||||||||  ||| |||| |||||||    
T  19119629 ttgaattacactctcctcccctc----ttatgttaaaatatacactccctcccgt-gaaaagtaaaatttatactcccctcctctataagatgcttgaat 19119723  T
Q  371 tacaacc 377  Q
    |||||||    
T  19119724 tacaacc 19119730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 375
Target Start/End: Original strand, 50143379 - 50143512
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaa 337  Q
    |||||||||||| |  ||| |||| || || | ||||||||||||||||||    ||||||| ||||||||||||||||     |||||||||  || ||    
T  50143379 gagtaaattacactattcttccctcagagatgtttgaattacactcccctc----ccctcttatgttaaaatatacattcccctcccttgaaaaatataa 50143474  T
Q  338 tttatactcccctcccgtatgagatacttgaattacaa 375  Q
    || ||| ||||||||| ||| |||| ||||||||||||    
T  50143475 ttaataatcccctcccctataagatgcttgaattacaa 50143512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 377
Target Start/End: Original strand, 27930843 - 27930898
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||| || |||||||||||||||| ||||| ||| |||| ||||||||||||||    
T  27930843 cccttgtaaagtaaaatttatactcctctcccttataagatgcttgaattacaacc 27930898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 29778001 - 29777950
Alignment:
Q  325 ttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    |||||| |||||||||||||||||||||| ||| ||||  ||||||||||||    
T  29778001 ttgaaaagtaaaatttatactcccctcccttataagatgtttgaattacaac 29777950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 44648666 - 44648749
Alignment:
Q  294 cctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||| |||||||||||||| |||   |||||| || ||||||| || |||||||| || ||| |||| ||||||||||||||    
T  44648666 cctcttatgttaaaatatacactttcctcccttgtaaagtaaaatctacactccccttccctataagatgcttgaattacaacc 44648749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 25087375 - 25087425
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaatta 372  Q
    ||||||||| ||||||| |||||||||||||  |||||||| |||||||||    
T  25087375 cccttgaaaagtaaaatctatactcccctcctctatgagatgcttgaatta 25087425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 376
Target Start/End: Complemental strand, 36512086 - 36512004
Alignment:
Q  294 cctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    |||||| |||||||||||| ||||||  || ||||||  ||||||||||||| ||||||  | |||||| |||||||| ||||    
T  36512086 cctcttatgttaaaatatatatttttctcctttgaaaaataaaatttatacttccctcctctttgagatgcttgaattgcaac 36512004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 1846620 - 1846564
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctc 293  Q
    ||||||||||||| ||| || |||| |  || |||||||||||||||||||||||||    
T  1846620 agagtaaattacacttccctcccctcaaagatgcttgaattacactcccctcccctc 1846564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 51612455 - 51612411
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||||||| |||||| ||| |||| ||||||||||||||    
T  51612455 taaaatttatactctcctcccttataagatgcttgaattacaacc 51612411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 261 - 376
Target Start/End: Original strand, 21037316 - 21037427
Alignment:
Q  261 taagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgag 360  Q
    |||| |||||||||||||||||||||||| |||    || |||||||||||||| |||   ||||||||| |||||||||||||||||||||  ||| ||    
T  21037316 taagagaagcttgaattacactcccctcctctc----ttatgttaaaatatacactttcctcccttgaaaagtaaaatttatactcccctccattataag 21037411  T
Q  361 atacttgaattacaac 376  Q
    || |||||||||||||    
T  21037412 attcttgaattacaac 21037427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 235 - 377
Target Start/End: Original strand, 51019643 - 51019781
Alignment:
Q  235 taagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggta 334  Q
    ||||||||||||||| | | || ||||||| || ||||||||||||||| ||||    ||||||| |||||||||||||| ||    ||||||||| |||    
T  51019643 taagagtaaattacactgccctcccctaagagatgcttgaattacactctcctc----ccctcttatgttaaaatatacacttccctcccttgaaaagta 51019738  T
Q  335 aaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||||| ||||||  | |||||| |||||||| |||||    
T  51019739 aaatttatacttccctccaatttgagatgcttgaattgcaacc 51019781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 6711258 - 6711359
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||| ||||||||||    |||||||||||||||||  |    ||||||||| |||||||||||||||||||||| ||| |||| |||||    
T  6711258 gcttgaattacacttccctcccctc----ttgtgttaaaatatacacctccctcccttgaaaagtaaaatttatactcccctcccctataagatgcttga 6711353  T
Q  369 attaca 374  Q
    ||||||    
T  6711354 attaca 6711359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 377
Target Start/End: Complemental strand, 23722132 - 23721996
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaa 336  Q
    ||||||||||||| ||| || |||| |  || |||||||||||||||||||||    |||||| |||||||||||||| |     |||||||||  ||||    
T  23722132 agagtaaattacacttccctcccctcaaagatgcttgaattacactcccctcc----cctcttatgttaaaatatacactaccctcccttgaaaaataaa 23722037  T
Q  337 atttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||| ||||||||||| ||| |||| || |||||||||||    
T  23722036 atttacactcccctcccttataagatgctagaattacaacc 23721996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 35666000 - 35666079
Alignment:
Q  295 ctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    ||||| |||||||||||||| ||    ||||||||| |||||||||||||||||||||| ||| |||| |||||||||||    
T  35666000 ctcttatgttaaaatatacacttacctcccttgaaaagtaaaatttatactcccctcccctataagatgcttgaattaca 35666079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 384
Target Start/End: Complemental strand, 32448988 - 32448877
Alignment:
Q  270 cttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaa 369  Q
    ||||||||||||||| ||||||||    || |||||||||||||| ||    || |||||| |||||| ||||||||||||||| ||| | |||||||||    
T  32448988 cttgaattacactccactcccctc----ttatgttaaaatatacacttccctcctttgaaaagtaaaagttatactcccctcccttataaaatacttgaa 32448893  T
Q  370 ttacaa-cctctccct 384  Q
    |||||| |||||||||    
T  32448892 ttacaatcctctccct 32448877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 376
Target Start/End: Complemental strand, 37424495 - 37424393
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||| ||||||||||||    || |||||||||||||| |     |||||||||| ||||||||||||||||||||| ||| |||| |||||    
T  37424495 gcttgaattacattcccctcccctc----ttatgttaaaatatacactcacctcccttgaaag-taaaatttatactcccctcccctataagatgcttga 37424401  T
Q  369 attacaac 376  Q
    ||||||||    
T  37424400 attacaac 37424393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 384
Target Start/End: Complemental strand, 7480005 - 7479917
Alignment:
Q  296 tcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctccc-gtatgagatacttgaattacaacctctccct 384  Q
    |||| |||||||||||||| ||  |||| |||||| ||||||||||||||||||||||  ||| |||| ||||||||||||| |||||||    
T  7480005 tcttatgttaaaatatacacttcctccc-ttgaaaagtaaaatttatactcccctccctttataagatgcttgaattacaacttctccct 7479917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 351
Target Start/End: Original strand, 8138316 - 8138426
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaa 336  Q
    ||||||||||||| | | || ||||||| |||||||||||||||| |||||    | |||||| |||||||||||||| ||    |||||||||  ||||    
T  8138316 agagtaaattacactcccctcccctaagagaagcttgaattacacacccct----ttcctcttatgttaaaatatacacttccctcccttgaaaaataaa 8138411  T
Q  337 atttatactcccctc 351  Q
    |||||||||||||||    
T  8138412 atttatactcccctc 8138426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 49703068 - 49702987
Alignment:
Q  296 tcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||| |||||||||||||||||||  |||||| || |||||||||||||| | ||||| ||| ||||  |||||||||||||    
T  49703068 tcttatgttaaaatatacatttttctcccttgtaaagtaaaatttatacttctctcccttataagatgtttgaattacaacc 49702987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 25010106 - 25010005
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||| |||||||||    || |||||||||||||| |   | ||||||||| |||||||||||||  ||||||| ||| |||| |||||    
T  25010106 gcttgaattacactctcctcccctc----ttatgttaaaatatacactccattcccttgaaaagtaaaatttatacgtccctcccttataagatgcttga 25010011  T
Q  369 attaca 374  Q
    ||||||    
T  25010010 attaca 25010005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 33046606 - 33046690
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| ||||||||| |||| |||   ||||||||| |||||||| ||||||||||||| ||| ||||  |||||||||||||    
T  33046606 ccctcttatgttaaaatctacactttactcccttgaaaagtaaaattaatactcccctcccttataagatgtttgaattacaacc 33046690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 50825314 - 50825230
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||  | | | || |||||| ||||||||||||||| |||||| ||| |||| ||||||||||||||    
T  50825314 ccctcttatgttaaaatataccctctattcctttgaaaagtaaaatttatactctcctcccctataagatgcttgaattacaacc 50825230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 54092859 - 54092783
Alignment:
Q  301 tgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||||||| ||    ||||||||| | |||||||| ||||||||||| ||| |||||||||||||||||||    
T  54092859 tgttaaaatatacaattccctcccttgaaaagaaaaatttacactcccctcccctataagatacttgaattacaacc 54092783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 379
Target Start/End: Original strand, 4949962 - 4950066
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    ||||||||||||||||||| |||    || |||||||||||||| |   | ||||| |||  ||||||| ||||||||||||| ||| |||| |||||||    
T  4949962 ttgaattacactcccctcctctc----ttatgttaaaatatacactcccttcccttaaaaaataaaattaatactcccctcccctataagatgcttgaat 4950057  T
Q  371 tacaacctc 379  Q
    |||||||||    
T  4950058 tacaacctc 4950066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 16192364 - 16192260
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||||||||| |||    || |||||||||||||| |     | |||| || |||||||||||||||||||||| ||| |||| |||||    
T  16192364 gcttgaattacactcccctcctctc----ttatgttaaaatatacactcccctcacttgcaatgtaaaatttatactcccctcccttataagatgcttga 16192269  T
Q  369 attacaacc 377  Q
    |||||||||    
T  16192268 attacaacc 16192260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 377
Target Start/End: Complemental strand, 20545098 - 20544963
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaa 337  Q
    |||||||||||| | | || |||| || || |||||||||||||||||||||    |||||| ||||||||||||||||     ||||| |||  || ||    
T  20545098 gagtaaattacactcccctcccctcagagatgcttgaattacactcccctcc----cctcttatgttaaaatatacattcccctcccttaaaaaatataa 20545003  T
Q  338 tttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    || ||| ||||||||| ||| |||| ||||||||||||||    
T  20545002 ttaataatcccctcccctataagatgcttgaattacaacc 20544963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 4963982 - 4964035
Alignment:
Q  332 gtaaaatttatactcccctcccgtatgagatacttgaattaca-acctctccct 384  Q
    ||||||||||||||||||| || |||||||| ||||||||||| ||||||||||    
T  4963982 gtaaaatttatactcccctaccctatgagatgcttgaattacacacctctccct 4964035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 374
Target Start/End: Complemental strand, 7797695 - 7797561
Alignment:
Q  236 aagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaa 335  Q
    |||||||||||||| | | || |||| |  || |||||||||||| ||||||||| ||    || |||||||||||||| ||    ||||||||| ||||    
T  7797695 aagagtaaattacactcccctcccctcaaagatgcttgaattacattcccctcccttc----ttatgttaaaatatacacttccctcccttgaaaagtaa 7797600  T
Q  336 aatttatactcccctcccgtatgagatacttgaattaca 374  Q
    |||||| |||||| |||| ||| |||| |||||||||||    
T  7797599 aatttacactcccatcccctataagattcttgaattaca 7797561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 796962 - 796910
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattac-aacctctccct 384  Q
    ||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||    
T  796962 taaaatttatattcccctcccttataagatacttgaattacaaacctctccct 796910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 26705120 - 26705171
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaacctctccct 384  Q
    ||||||| ||||||||||||| ||| |||| |||||||||||||| ||||||    
T  26705120 taaaattaatactcccctcccctataagatgcttgaattacaacccctccct 26705171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 6232524 - 6232570
Alignment:
Q  339 ttatactcccctcccgtatgagatacttgaattac-aacctctccct 384  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||||||    
T  6232524 ttatactcccctcccttataagatacttgaattacaaacctctccct 6232570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 23265763 - 23265721
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  23265763 taaaatttatactcccctcccttataagatgcttgaattacaa 23265721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 372
Target Start/End: Complemental strand, 17723463 - 17723369
Alignment:
Q  274 aattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaatta 372  Q
    |||||||||||||||||||     || ||||||||||||||  ||   |||||||||  ||||||||||||||||||| | ||| |||| |||||||||    
T  17723463 aattacactcccctcccctt----ttatgttaaaatatacaccttcctcccttgaaaaataaaatttatactcccctcgcctataagatgcttgaatta 17723369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 44664752 - 44664829
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    ||||||| |||||||||||||||| |   |||||||||  ||||||||||| |||||| || ||| |||| |||||||    
T  44664752 ccctcttatgttaaaatatacattctcctcccttgaaaaataaaatttataatccccttccttataagatgcttgaat 44664829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 12250770 - 12250822
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattac-aacctctccct 384  Q
    ||||||||||||||||||||  ||| |||| |||||||||| |||||||||||    
T  12250770 taaaatttatactcccctccattataagatgcttgaattacaaacctctccct 12250822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 19313431 - 19313475
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  19313431 taaaatttacactcccctcccttataagatgcttgaattacaacc 19313475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 46076426 - 46076478
Alignment:
Q  325 ttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||| |||||||||||||||| || || ||||||||  |||||||||||||    
T  46076426 ttgaaaagtaaaatttatactcctcttccctatgagatgattgaattacaacc 46076478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 271 - 384
Target Start/End: Original strand, 17564698 - 17564807
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    |||||||||||| ||||||||||    || |||||||||||||| |     ||||||||| |||||||||||||||||||||| ||| |||| |||||||    
T  17564698 ttgaattacacttccctcccctc----ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcccctataagatgcttgaat 17564793  T
Q  371 tacaacctctccct 384  Q
    ||||||||||||||    
T  17564794 tacaacctctccct 17564807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 44284431 - 44284310
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaa 336  Q
    ||||||||||||| | | || ||||||| || |||||||||||||||||||||||||    || |||||||||||||| |||   |||||||||  ||||    
T  44284431 agagtaaattacactcccctcccctaagagatgcttgaattacactcccctcccctc----ttatgttaaaatatacactttcctcccttgaaaaataaa 44284336  T
Q  337 atttatactcccctcccgtatgagat 362  Q
    ||||||||||||||||| | ||||||    
T  44284335 atttatactcccctcccctttgagat 44284310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 34363939 - 34364039
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||||||||||||     || |||||||||||||||||    ||||||||| ||||||||||||||||||| || ||| |||| |||||    
T  34363939 gcttgaattacactcccctcccct-----ttatgttaaaatatacatttccctcccttgaaaagtaaaatttatactccccttccctataagatgcttga 34364033  T
Q  369 attaca 374  Q
    ||||||    
T  34364034 attaca 34364039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 8443353 - 8443273
Alignment:
Q  294 cctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    |||||| |||||||||||||| ||  | ||||||||| ||||||||||||||| |||||| ||| |||| |||||||||||    
T  8443353 cctcttatgttaaaatatacacttccttcccttgaaaagtaaaatttatactctcctcccctataagatgcttgaattaca 8443273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 372
Target Start/End: Original strand, 32903609 - 32903741
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttt-tccccttgaaaggtaa 335  Q
    ||||||||||||| |||||| |  |||| |||| |||||||||||||| ||||| ||    || |||||||||||||| |  | ||||||| ||| ||||    
T  32903609 agagtaaattacacttctctccgttaagagaagtttgaattacactccactcccttc----ttatgttaaaatatacactcatctccccttaaaaagtaa 32903704  T
Q  336 aatttatactcccctcccgtatgagatacttgaatta 372  Q
    |||||||||||| ||||| | |||||| |||||||||    
T  32903705 aatttatactccgctcccatttgagatgcttgaatta 32903741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 374
Target Start/End: Original strand, 14879550 - 14879649
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaat 370  Q
    ||||||||||||| |||||||||    || |||||||||||||||||    ||||||||| |||||||||||||||||||||| ||| | ||  ||||||    
T  14879550 ttgaattacactctcctcccctc----ttatgttaaaatatacatttccgtcccttgaaaagtaaaatttatactcccctcccctataacatgtttgaat 14879645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 379
Target Start/End: Complemental strand, 34925490 - 34925348
Alignment:
Q  238 gagtaaattacatttctctaccctaagggaagcttgaattacactcccctcc-cctccctcttgtgttaaaatatacattttttccccttgaaaggtaaa 336  Q
    |||||||||||| ||| || |||| |  || |||||||||||| || ||||| |||| ||||| |||||||||||||| |     ||||||||| |||||    
T  34925490 gagtaaattacacttccctcccctcaaagatgcttgaattacattctcctccacctctctcttatgttaaaatatacactcccctcccttgaaaagtaaa 34925391  T
Q  337 atttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    || ||||||| | |||| ||| |||| ||||||||||||||||    
T  34925390 atgtatactctcttcccttataagatgcttgaattacaacctc 34925348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 43777078 - 43776941
Alignment:
Q  235 taagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggta 334  Q
    ||||||||||||| | | |||| |||| |  || |||||||||||||||| ||    |||||||| |||| ||||||||| |||   | ||| |||  ||    
T  43777078 taagagtaaattatactcctcttccctcaaagatgcttgaattacactccact----tccctcttatgtttaaatatacactttcctctcttaaaaaata 43776983  T
Q  335 aaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||||||||||||||||| ||| |||| |||||||||||||    
T  43776982 aaatttatactcccctcccttataagatgcttgaattacaac 43776941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 24809616 - 24809716
Alignment:
Q  274 aattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaag-gtaaaatttatactcccctcccgtatgagatacttgaatta 372  Q
    ||||||||||||||||||||    || |||||||||||||| ||    |||||||||  ||||||||| |||||||||||| ||| |||| |||||||||    
T  24809616 aattacactcccctcccctc----ttatgttaaaatatacacttccatcccttgaaaaagtaaaatttttactcccctcccttataagatgcttgaatta 24809711  T
Q  373 caacc 377  Q
    |||||    
T  24809712 caacc 24809716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 372
Target Start/End: Original strand, 41262122 - 41262201
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaatta 372  Q
    ||||||| |||||||||||| ||||    |||||||||  ||||||||||||||||||||| ||| |||| |||||||||    
T  41262122 ccctcttatgttaaaatatatatttccctcccttgaaaaataaaatttatactcccctcccttataagatgcttgaatta 41262201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 11760094 - 11760012
Alignment:
Q  295 ctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||| |||||||||||||| | ||  || |||||| |||||||||||||||||||||  ||| |||| |||| |||||||||    
T  11760094 ctcttatgttaaaatatacactcttctcctttgaaaagtaaaatttatactcccctcctctataagatgcttgcattacaacc 11760012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 39999032 - 39998978
Alignment:
Q  325 ttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    |||||| |||| ||||||||||||||||| ||| |||| ||||||||||||||||    
T  39999032 ttgaaaagtaagatttatactcccctcccttataagatgcttgaattacaacctc 39998978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 377
Target Start/End: Complemental strand, 30354617 - 30354472
Alignment:
Q  233 tttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctcc-ctcttgtgttaaaatatacattttttccccttgaaag 331  Q
    ||||||||||||||||||||| || |||| |  ||  ||||||||||||||| |||| |||| || || |||||||||||||| |  |  |||||||||     
T  30354617 tttaagagtaaattacatttccctcccctcaaagatacttgaattacactcctctcctctcctcttttatgttaaaatatacactcctctcccttgaaaa 30354518  T
Q  332 gtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||| || ||||||  ||| | | |||||| |||||||| |||||    
T  30354517 gtaaatttgatactcatctctcttgtgagatgcttgaatttcaacc 30354472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 31740149 - 31740096
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||| |||||||||||||||||||||| ||| |||| ||| ||||||||    
T  31740149 cccttgaaaagtaaaatttatactcccctcccttataagatgcttaaattacaa 31740096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 375
Target Start/End: Complemental strand, 36016808 - 36016707
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||| |||||||    | ||||| |||||||||||||| |   | ||||||||| ||||||||||||||| |||||| ||| |||| |||||    
T  36016808 gcttgaattacaatcccctc----ctctcttatgttaaaatatacactccct-cccttgaaaagtaaaatttatactctcctcccttataagatgcttga 36016714  T
Q  369 attacaa 375  Q
    |||||||    
T  36016713 attacaa 36016707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 377
Target Start/End: Complemental strand, 37872905 - 37872812
Alignment:
Q  284 ccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||  ||||||| ||||||||||||||||      |||||||| |||||| |||||||||||| || ||| | |||||||||||||||||    
T  37872905 ccctccctcccctcttatgttaaaatatacattccccttccttgaaaagtaaaagttatactcccctaccttataaaatacttgaattacaacc 37872812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 11141050 - 11141006
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||||    
T  11141050 taaaatttatactcccctcccttataagattcttgaattacaacc 11141006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 13439557 - 13439612
Alignment:
Q  323 ccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    ||||||||| ||||||||||||||||||||| ||| ||||  |||||||||||||||    
T  13439557 ccttgaaag-taaaatttatactcccctcccttataagatgtttgaattacaacctc 13439612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 37266171 - 37266079
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccc-tcccgtatgagatacttgaattacaacctctccct 384  Q
    ||||||| |||||||||||||| |     ||||||||| |||| ||||||||||||| |||| ||| |||| |||||||||||||| ||||||    
T  37266171 ccctcttatgttaaaatatacactccactcccttgaaaagtaagatttatactccccctcccctataagatgcttgaattacaacccctccct 37266079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 40791094 - 40791178
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||| |     ||||||||| ||||||||||||||||| |||| ||| ||||  |||||||||||||    
T  40791094 ccctcttatgttaaaatatacactaccctcccttgaaaagtaaaatttatactcccttcccttataagatgtttgaattacaacc 40791178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 4257261 - 4257210
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattac 373  Q
    ||||||||| ||| |||||||||||||||||| ||||||||  |||||||||    
T  4257261 cccttgaaaagtagaatttatactcccctcccctatgagatgattgaattac 4257210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 17734941 - 17734855
Alignment:
Q  292 tccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    |||||||| ||||||||||||||||     ||||||||| |||||||||||| |||||| || ||| |||| |||| |||||||||||    
T  17734941 tccctcttatgttaaaatatacattcacctcccttgaaaagtaaaatttata-tccccttccttataagatgcttggattacaacctc 17734855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 37836947 - 37837051
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||    || || || ||||||||||||||||     ||||||||| |||||||||||||| | |||||  || |||| |||||    
T  37836947 gcttgaattacactcccct----tctctattatgttaaaatatacattcccctcccttgaaaagtaaaatttatacttctctccccaataagatgcttga 37837042  T
Q  369 attacaacc 377  Q
    |||||||||    
T  37837043 attacaacc 37837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 377
Target Start/End: Complemental strand, 3940261 - 3940162
Alignment:
Q  274 aattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattac 373  Q
    ||||||||||||||||||||    || | |||||||||||||||||  || |||||| ||||||||||||  | |||  | ||| |||| ||||||||||    
T  3940261 aattacactcccctcccctc----ttatattaaaatatacatttttctcctttgaaaagtaaaatttatatccacctttcctataagatgcttgaattac 3940166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 6293174 - 6293132
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  6293174 taaaatttatactcccctcccttataagatgcttgaattacaa 6293132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 14364438 - 14364396
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  14364438 taaaatttatactcccctcccttataagatgcttgaattacaa 14364396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 40134201 - 40134143
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccc 295  Q
    ||||||||||||| | | || ||||| | |||||||||||||||||||| |||||||||    
T  40134201 agagtaaattacactcccctcccctatgagaagcttgaattacactcccttcccctccc 40134143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 253571 - 253656
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatact-cccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||| |  |  ||||||||| |||| ||||||||| |||||||| ||| ||||  |||||||||||||    
T  253571 ccctcttatgttaaaatatacactcctctcccttgaaaagtaagatttatactccccctcccctataagatgattgaattacaacc 253656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 662287 - 662202
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatact-cccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||| |  |  ||||||||| |||| ||||||||| |||||||| ||| ||||  |||||||||||||    
T  662287 ccctcttatgttaaaatatacactcctctcccttgaaaagtaagatttatactccccctcccctataagatgattgaattacaacc 662202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 848085 - 848000
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatact-cccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||| |  |  ||||||||| |||| ||||||||| |||||||| ||| ||||  |||||||||||||    
T  848085 ccctcttatgttaaaatatacactcctctcccttgaaaagtaagatttatactccccctcccctataagatgattgaattacaacc 848000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 17496315 - 17496392
Alignment:
Q  301 tgttaaaatatacattttttccccttgaaaggtaaaatttatact-cccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||||||| | |   ||||||||| |||| ||||||||| |||||||| ||| |||| ||||||||||||||    
T  17496315 tgttaaaatatacactctcctcccttgaaaagtaagatttatactccccctcccctataagatgcttgaattacaacc 17496392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 21304628 - 21304579
Alignment:
Q  327 gaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||||||||||||| |||||| |||| ||| |||| |||||||||||||    
T  21304628 gaaaggtaaaatttacactcccatcccttataagattcttgaattacaac 21304579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 29636468 - 29636411
Alignment:
Q  236 aagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctc 293  Q
    |||||||||||||| | |||| |||| |  || |||||||||||||||||||||||||    
T  29636468 aagagtaaattacaatcctcttccctcaaagatgcttgaattacactcccctcccctc 29636411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 42198563 - 42198592
Alignment:
Q  266 gaagcttgaattacactcccctcccctccc 295  Q
    ||||||||||||||||||||||||||||||    
T  42198563 gaagcttgaattacactcccctcccctccc 42198592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 377
Target Start/End: Original strand, 44746221 - 44746306
Alignment:
Q  292 tccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||| ||||||||||||||||     |||||||||  ||||||| ||||| ||||||| ||| ||||  |||||||||||||    
T  44746221 tccctcttatgttaaaatatacattcccctcccttgaaaaataaaattaatacttccctcccctataagatgtttgaattacaacc 44746306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 14880269 - 14880213
Alignment:
Q  237 agagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctc 293  Q
    ||||||||||||| | |||| |||| |  || |||||||||||||||||||||||||    
T  14880269 agagtaaattacactcctctcccctcaaagatgcttgaattacactcccctcccctc 14880213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 376
Target Start/End: Original strand, 3391755 - 3391886
Alignment:
Q  241 taaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaattt 340  Q
    ||||||||| |||||| ||||||| |||| |||||||||| | | ||||||||    || |||||||||||||| |     ||||| ||| |||||||||    
T  3391755 taaattacacttctcttccctaagagaagtttgaattacatttcactcccctc----ttatgttaaaatatacactcccctcccttaaaaagtaaaattt 3391850  T
Q  341 atactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||||||||||| |||||||| |||||||||||||    
T  3391851 atactcccctcccctatgagatgcttgaattacaac 3391886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 376
Target Start/End: Complemental strand, 40401600 - 40401497
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||||||    || |||||||||||||| |   | ||||||||| ||||||||||||||| |||||| ||| |||| |||||    
T  40401600 gcttgaattacactcccctcccctc----ttatgttaaaatatacactcccttcccttgaaaagtaaaatttatactctcctcccttataagatgcttga 40401505  T
Q  369 attacaac 376  Q
    ||||||||    
T  40401504 attacaac 40401497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 377
Target Start/End: Original strand, 5227893 - 5227982
Alignment:
Q  288 cccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||||| ||||||||||||||||     ||||| ||| |||||||||||||||||||||| ||| |||| ||||||||||||||    
T  5227893 cccctccctcttatgttaaaatatacattcccctcccttaaaaagtaaaatttatactcccctcccttataagatgcttgaattacaacc 5227982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 23232912 - 23232996
Alignment:
Q  295 ctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    ||||||||||||||||||||||      |||||||| |||||||||||||||||||||  ||| |||| ||||||||||||||||    
T  23232912 ctcttgtgttaaaatatacattccccttccttgaaaagtaaaatttatactcccctcctctataagatgcttgaattacaacctc 23232996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 377
Target Start/End: Complemental strand, 16426093 - 16425954
Alignment:
Q  234 ttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggt 333  Q
    |||||||||||||||| | | || ||||||| || |||| || || |||||| |||||||    || |||||||||||||| |     ||||||||| ||    
T  16426093 ttaagagtaaattacactcccctcccctaagagatgcttcaagtatactcccttcccctc----ttatgttaaaatatacactcccctcccttgaaaagt 16425998  T
Q  334 aaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    || ||||||||||||||||| |||||||| |||||| |||||||    
T  16425997 aatatttatactcccctcccctatgagatgcttgaaatacaacc 16425954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 374
Target Start/End: Original strand, 22711626 - 22711761
Alignment:
Q  235 taagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggta 334  Q
    ||||||||||||||| | |||| |||| |  || |||||| |||||||| |||||||||    || |||||||||||||| |     | ||||||| |||    
T  22711626 taagagtaaattacactcctcttccctcaaagatgcttgatttacactctcctcccctc----ttatgttaaaatatacactccactctcttgaaaagta 22711721  T
Q  335 aaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    ||||||||||||||||||| ||| |||| |||||||||||    
T  22711722 aaatttatactcccctcccctataagatgcttgaattaca 22711761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 380
Target Start/End: Complemental strand, 27619682 - 27619575
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||||||    || |||||||||||||| |  |  ||||| ||| ||||| || ||||||||||||| | |||||| |||||    
T  27619682 gcttgaattacactcccctcccctc----ttatgttaaaatatacactcctctcccttaaaaagtaaatttgatactcccctcccttgtgagatgcttga 27619587  T
Q  369 attacaacctct 380  Q
    ||| ||||||||    
T  27619586 atttcaacctct 27619575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 36688906 - 36688828
Alignment:
Q  271 ttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctccc 353  Q
    |||||||||||||||||||||||    || |||||||||||||| |||   ||||||||| |||||| |||||||||||||||    
T  36688906 ttgaattacactcccctcccctc----ttatgttaaaatatacactttcctcccttgaaaagtaaaagttatactcccctccc 36688828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 377
Target Start/End: Original strand, 42813067 - 42813152
Alignment:
Q  292 tccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||| ||||||||||||||   |   || |||||| |||||||||||||||||||||| ||| |||| ||||||||||||||    
T  42813067 tccctcttatgttaaaatatacacactcctccgttgaaaagtaaaatttatactcccctcccctataagatgcttgaattacaacc 42813152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 48872086 - 48872138
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    ||||||||| |||||||||||||||||||||| ||| |||| |||||||||||    
T  48872086 cccttgaaaagtaaaatttatactcccctcccatataagatgcttgaattaca 48872138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 375
Target Start/End: Original strand, 11696258 - 11696337
Alignment:
Q  296 tcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    |||| |||||||| ||||| |||   || |||||| |||||||||||||||| ||||| |||||||| ||||||||||||    
T  11696258 tcttatgttaaaagatacactttcctccattgaaaagtaaaatttatactcctctcccctatgagatgcttgaattacaa 11696337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 38790098 - 38790202
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||||||||    ||||||| |||||||||||||| |  |  || |||||| ||||| || ||||||||||||| |||||||  |||||    
T  38790098 gcttgaattacactcccctc----ccctcttatgttaaaatatacactcatctcctttgaaaagtaaagttgatactcccctcccttatgagaagcttga 38790193  T
Q  369 attacaacc 377  Q
    ||| |||||    
T  38790194 atttcaacc 38790202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 26200477 - 26200415
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctctccct 384  Q
    ||||||||| ||||||||| ||||  |||||| ||| |||| |||||||||||||||||||||    
T  26200477 cccttgaaaagtaaaatttgtactttcctcccttataagatgcttgaattacaacctctccct 26200415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 375
Target Start/End: Original strand, 26902711 - 26902785
Alignment:
Q  301 tgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    |||||||||||||| ||||  |||||||||  ||||||||| |||| |||||| ||| |||| ||||||||||||    
T  26902711 tgttaaaatatacacttttctcccttgaaaaataaaatttacactctcctcccctataagatgcttgaattacaa 26902785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 33869947 - 33869890
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    ||||||||| |||||||||||||||||||| | ||| ||||  |||||||||||||||    
T  33869947 cccttgaaaagtaaaatttatactcccctctcttataagatgtttgaattacaacctc 33869890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 377
Target Start/End: Complemental strand, 46011198 - 46011064
Alignment:
Q  239 agtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaat 338  Q
    ||||||||||| | |||| |||| |  || |||||||||||||||||||    || ||||| ||||||||||| || |     ||||||||| | |||||    
T  46011198 agtaaattacactcctctcccctcaaagatgcttgaattacactcccct----tctctcttatgttaaaatatgcactcccctcccttgaaaaggaaaat 46011103  T
Q  339 ttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||||||||||| ||| ||||  |||||||||||||    
T  46011102 ttatactcccctcccctataagatgtttgaattacaacc 46011064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 2146852 - 2146800
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattac-aacctctccct 384  Q
    ||||||||||||||||||||| ||| |||| |||||||||| |||||||||||    
T  2146852 taaaatttatactcccctcccttataagatgcttgaattacaaacctctccct 2146800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 11639922 - 11639998
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccc 349  Q
    ||||||||||||||||||||    ||||||| |||||||||||||| | |   || |||||| ||||||||||||||||||    
T  11639922 gcttgaattacactcccctc----ccctcttatgttaaaatatacactctcctcctttgaaaagtaaaatttatactcccc 11639998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 29615542 - 29615646
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||| ||||    ||||||| ||||||||||||||||     ||||| ||| |||||||| |||||||| |||| ||| |||| ||| |    
T  29615542 gcttgaattacactctcctc----ccctcttatgttaaaatatacattcccctcccttaaaaagtaaaattaatactcccttcccttataagatgcttaa 29615637  T
Q  369 attacaacc 377  Q
    |||||||||    
T  29615638 attacaacc 29615646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 377
Target Start/End: Original strand, 32387523 - 32387610
Alignment:
Q  290 cctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||||||| |||||||||||||| ||    ||||||||| ||||||||||||||||  | || | |||||| |||||||| |||||    
T  32387523 cctccctcttatgttaaaatatacacttccatcccttgaaaagtaaaatttatactccttttccatttgagatgcttgaattgcaacc 32387610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 38987778 - 38987882
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||| ||||||||||||||    || |||||||||||||| |     | ||||||| |||||||||| ||||||||||| ||| ||||  ||||    
T  38987778 gcttgaattaaactcccctcccctc----ttatgttaaaatatacactccactctcttgaaaagtaaaatttacactcccctcccctataagatgtttga 38987873  T
Q  369 attacaacc 377  Q
    |||||||||    
T  38987874 attacaacc 38987882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 23727822 - 23727887
Alignment:
Q  301 tgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaa 369  Q
    |||||||||||||| || |||   |||||| |||||||||||||||||||||| ||| |||| ||||||    
T  23727822 tgttaaaatatacacttcttc---ttgaaaagtaaaatttatactcccctcccttataagatgcttgaa 23727887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 29736157 - 29736236
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcc 352  Q
    |||||||||||||||| ||    |||||||| ||||||||||||||||||   ||||||||| ||||||| || ||||| ||||    
T  29736157 gcttgaattacactccact----tccctcttatgttaaaatatacattttccacccttgaaaagtaaaatctacactcctctcc 29736236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 40344416 - 40344374
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  40344416 taaaatttatactcccctcccttataagatgcttgaattacaa 40344374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 374
Target Start/End: Complemental strand, 8123305 - 8123225
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    ||||||| |||||||||||||| ||    | |||||||  |||||||||||| |||||||| ||| ||||||||||||||||    
T  8123305 ccctcttatgttaaaatatacacttccctctcttgaaaattaaaatttatac-cccctcccctataagatacttgaattaca 8123225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 19333048 - 19332995
Alignment:
Q  324 cttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||||||||||| ||| |||| |||| | |||||||    
T  19333048 cttgaaaagtaaaatttatactcccctcccctataagatgcttgcactacaacc 19332995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 45941500 - 45941581
Alignment:
Q  295 ctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaac 376  Q
    ||||| |||||||||||| |||  |  || ||| || ||||||| ||||||||| |||| ||| ||||||||||||||||||    
T  45941500 ctcttatgttaaaatatatattcctctcctttgtaaagtaaaatgtatactcccgtcccttataagatacttgaattacaac 45941581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 29824008 - 29823956
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattac-aacctctccct 384  Q
    ||||||||||||||||||| | ||| |||| |||||||||| |||||||||||    
T  29824008 taaaatttatactcccctctcttataagatgcttgaattacaaacctctccct 29823956  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 34834894 - 34834946
Alignment:
Q  325 ttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    |||||| |||||||||||| ||||||||  ||| |||| ||||||||||||||    
T  34834894 ttgaaaagtaaaatttatattcccctcctttataagatgcttgaattacaacc 34834946  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 36848525 - 36848445
Alignment:
Q  294 cctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattaca 374  Q
    |||||| |||||||||||||| |||   ||||| ||| |||||||||||||| ||||||| ||| | ||  ||||||||||    
T  36848525 cctcttatgttaaaatatacactttcctccctttaaaagtaaaatttatacttccctcccttataaaatgtttgaattaca 36848445  T

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Target: scaffold0159 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 34408 - 34510
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||      |||| ||||||||||||||||  |  |||||||||  ||||||||||||||||||||| ||| |||| |||||    
T  34408 gcttgaattacactcccctcc------tcttatgttaaaatatacattcctcacccttgaaaaataaaatttatactcccctcccttataagatgcttga 34501  T
Q  369 attacaacc 377  Q
    ||| |||||    
T  34502 attgcaacc 34510  T

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Target: scaffold0068 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 59286 - 59390
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    ||||||||||||||| |||||||||    || |||||||||||||| |     ||||||||| |||||||||||||||||||||  ||| |||| |||||    
T  59286 gcttgaattacactctcctcccctc----ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcctctataagatgcttga 59381  T
Q  369 attacaacc 377  Q
    |||||||||    
T  59382 attacaacc 59390  T

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Target: scaffold0289 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 380
Target Start/End: Complemental strand, 4096 - 3990
Alignment:
Q  269 gcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttga 368  Q
    |||||||||||||||||||||| ||    || |||||||||||||| ||    |||||||||  |||||||||||| |||||||| ||| ||||||||||    
T  4096 gcttgaattacactcccctcccatc----ttatgttaaaatatacacttccgtcccttgaaaattaaaatttatac-cccctcccctataagatacttga 4002  T
Q  369 attacaacctct 380  Q
    |||||| |||||    
T  4001 attacatcctct 3990  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 377
Target Start/End: Complemental strand, 14806 - 14667
Alignment:
Q  234 ttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggt 333  Q
    |||||||||||||||| | | || ||||||| || |||| || || |||||| |||||||    || |||||||||||||| |     ||||||||| ||    
T  14806 ttaagagtaaattacactcccctcccctaagagatgcttcaagtatactcccttcccctc----ttatgttaaaatatacactcccctcccttgaaaagt 14711  T
Q  334 aaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    || ||||||||||||||||| |||||||| |||||| |||||||    
T  14710 aatatttatactcccctcccctatgagatgcttgaaatacaacc 14667  T

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Target: scaffold0003; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 377
Target Start/End: Complemental strand, 28952 - 28813
Alignment:
Q  234 ttaagagtaaattacatttctctaccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggt 333  Q
    |||||||||||||||| | | || ||||||| || |||| || || |||||| |||||||    || |||||||||||||| |     ||||||||| ||    
T  28952 ttaagagtaaattacactcccctcccctaagagatgcttcaagtatactcccttcccctc----ttatgttaaaatatacactcccctcccttgaaaagt 28857  T
Q  334 aaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    || ||||||||||||||||| |||||||| |||||| |||||||    
T  28856 aatatttatactcccctcccctatgagatgcttgaaatacaacc 28813  T

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Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 67730 - 67836
Alignment:
Q  258 ccctaagggaagcttgaattacactcccctcccctccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtat 357  Q
    ||||||| ||| | ||||||||||||||||||||||    || || ||||||||||| ||||  || |||||| |||||||||||||||| ||||| |||    
T  67730 ccctaagagaaacatgaattacactcccctcccctc----ttatgataaaatatacacttttctcctttgaaaagtaaaatttatactccactcccatat 67825  T
Q  358 gagatacttga 368  Q
     |||| |||||    
T  67826 aagatgcttga 67836  T

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Target: scaffold0971 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 3174 - 3231
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    ||||||||| |||||||| ||||||||||||| |||||||| ||| |||| |||||||    
T  3174 cccttgaaaagtaaaattgatactcccctcccttatgagatgcttaaatttcaacctc 3231  T

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Target: scaffold0189 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 11335 - 11419
Alignment:
Q  293 ccctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacc 377  Q
    ||||||| |||||||||||||| |     ||||||||| |||||||||| |||||| |||| ||| |||| ||||||||||||||    
T  11335 ccctcttatgttaaaatatacactcccctcccttgaaaagtaaaatttacactcccttcccctataagatgcttgaattacaacc 11419  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 351316 - 351396
Alignment:
Q  295 ctcttgtgttaaaatatacattttttccccttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||| |||||||||||||| ||    |||||||||  ||| ||||||||||||||||| ||| |||| ||||||||||||    
T  351316 ctcttatgttaaaatatacacttcactcccttgaaaaataacatttatactcccctcccctataagatgcttgaattacaa 351396  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 379
Target Start/End: Complemental strand, 11627 - 11573
Alignment:
Q  324 cttgaaaggtaaaatttatactcccctcccgtatgagatacttgaattacaacctc 379  Q
    ||||||| ||||||||||||| |||||||| ||| |||| ||||||||||||||||    
T  11627 cttgaaaagtaaaatttatac-cccctcccctataagatgcttgaattacaacctc 11573  T

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Target: scaffold0067 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 18721 - 18679
Alignment:
Q  333 taaaatttatactcccctcccgtatgagatacttgaattacaa 375  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  18721 taaaatttatactcccctcccttataagatgcttgaattacaa 18679  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 25295 - 25335
Alignment:
Q  322 cccttgaaaggtaaaatttatactcccctcccgtatgagat 362  Q
    ||||||||| |||||||||||||||||||||| ||| ||||    
T  25295 cccttgaaaagtaaaatttatactcccctcccctataagat 25335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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