View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2795_high_5 (Length: 405)
Name: NF2795_high_5
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 179 - 403
Target Start/End: Original strand, 39092904 - 39093128
Alignment:
| Q |
179 |
aaatacagggcaaaatcaaagtttgtgaagaataattccccttgtagacacataaaacaacagtaaagagacttaaataaaactcttaatagaatacgtg |
278 |
Q |
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| T |
39092904 |
aaatacaggccaaaatcaaagtttgtgaagaataattccccttgtagacacctaaaacaacaataaagagacttaaataaaactcttaatagaatacatg |
39093003 |
T |
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| Q |
279 |
ttaaatgcctccaagacaaaccaagaaaaaccgatgggaacttgaagcacacctaagactgagaacctaaagcaacaataaaacaacaaaagattctcac |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39093004 |
ttaaatgcctccaagacaaaccaagaaaaaccgatgggaacttgaagcacacctaagactgagaacctaaagcaacaagaaaacaacaaaagattctcac |
39093103 |
T |
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| Q |
379 |
gaccttaatactttatgcaactctg |
403 |
Q |
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| T |
39093104 |
gaccttaatactttatgcaactctg |
39093128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 39092691 - 39092851
Alignment:
| Q |
20 |
gctcgaatattatttactagagtactacactcatgcatctcatgtatcagaaataatatcttatgttgtttcaattaaaaaactataaaagcaaaacaac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39092691 |
gctcgaatattatttactagagtactacactcatgcatctcatgtatcagaaataatatcttatgttgtttcaattaaaaaactataaaagcaaaacaac |
39092790 |
T |
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| Q |
120 |
ttctttgtaacacacacatgggttttgatatgataacttaaagcacacctaagactgagaa |
180 |
Q |
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| T |
39092791 |
ttctttgtaactcacacatgggttttgatatgataacttaaagcacacctaagactgagaa |
39092851 |
T |
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