View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2795_high_6 (Length: 369)
Name: NF2795_high_6
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 353
Target Start/End: Complemental strand, 49446866 - 49446527
Alignment:
| Q |
14 |
agacctctaacttagctcaaaccagttagattaannnnnnnnnnnagtgacaaatgttacctgttagttattagatttactattcattttttggaatgat |
113 |
Q |
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| T |
49446866 |
agacctctaacttagctcaatccagttagattattttttttttttagtgacaaatgttaccagttagttgttagatttactattcattttttggaatgat |
49446767 |
T |
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| Q |
114 |
aaatatctaatctgcttttacttctgttcaaaatctgccatcacaaattttctgtattagttgttatgtgctgaaacataacattttggttgtttgcatt |
213 |
Q |
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| T |
49446766 |
aaatatctaatctgcttttacttctgtgcaaaatcttccatcacaaattttctgtattagttgttatgtgctgaaacataacattttggttgtttgcatt |
49446667 |
T |
|
| Q |
214 |
ctgcagaaaattcaagttttcttacatcagaaatgtcatcaattccggataaagacgacgatgataggatcagcaatttaccggagactctcatctgtca |
313 |
Q |
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| T |
49446666 |
ctgcagaaaattcaagttttcttacatcagaaatgtcatcaattgcggataacgacgacgatgataggatcagcaatttaccggagactctcatctgtca |
49446567 |
T |
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| Q |
314 |
tattctctcttttctccctaccaaacaagctgttgccact |
353 |
Q |
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| T |
49446566 |
tattctctcttttctccctaccaaacaagctgttgccact |
49446527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 49427677 - 49427628
Alignment:
| Q |
304 |
tcatctgtcatattctctcttttctccctaccaaacaagctgttgccact |
353 |
Q |
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| T |
49427677 |
tcatctgtcatattatctcttttctcccaaccgaacaggcggttgccact |
49427628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 49439080 - 49439039
Alignment:
| Q |
312 |
catattctctcttttctccctaccaaacaagctgttgccact |
353 |
Q |
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| T |
49439080 |
catattctctcttttctcccaaccaaacaggttgttgccact |
49439039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 12539864 - 12539910
Alignment:
| Q |
306 |
atctgtcatattctctcttttctccctaccaaacaagctgttgccac |
352 |
Q |
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||||| || ||||||||||||||||||||||||||| ||| |||||| |
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| T |
12539864 |
atctgccacattctctcttttctccctaccaaacaatctgctgccac |
12539910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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