View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2795_low_11 (Length: 350)
Name: NF2795_low_11
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 26722129 - 26722448
Alignment:
| Q |
18 |
cttctcactcagaataatcgtgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatctttgcgtgatctgtaaatccata |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26722129 |
cttctcactcagaataatcatgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatctttgcgtaatctgtaaatccata |
26722228 |
T |
|
| Q |
118 |
ttactttttggtttcttttcaattgaaattttcagtttctgagtagctattgattccaattatttcatttctttatcttgcagaaaaattgccaaatcca |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722229 |
ttactttttgctttcttttcaattgaaattttcagtttctgagtagctattgattccaattatttcatttctttatcttgcagaaaaattgccaaatcca |
26722328 |
T |
|
| Q |
218 |
ggaggaaaatcatgttacgtaagtcattcttttataatattgcacatgtagttgtgtatctatgcatgaaagagtggtacaagttgcataaaatgttgta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26722329 |
ggaggaaaatcatgttacgtaagtcattcttttataatattgcacatgtagttgtgtatctatgcataaaagagtggtacaagttgcataaaatgttgta |
26722428 |
T |
|
| Q |
318 |
ttttactttcttttcttttc |
337 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
26722429 |
ttttactttcttttcttttc |
26722448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 2987585 - 2987887
Alignment:
| Q |
18 |
cttctcactcagaataatcgtgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatctttgcgtgatctgtaaatccata |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |
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| T |
2987585 |
cttctcactcagaataatcatgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatcttttcgtaatctgtaaatgcatg |
2987684 |
T |
|
| Q |
118 |
ttactttttggtttcttttcaattgaaattttcagtttctgagtagctattgattccaattatttcatttctttatcttgcagaaaaattgccaaatcca |
217 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2987685 |
ttactttttggtttcttctcaattgaaattttcagtttctgagtagctattgatttcaattatttcatttctttatcttgcagaaaaattgccaaatcca |
2987784 |
T |
|
| Q |
218 |
ggaggaaaatcatgttacgtaagtcattcttttataatattgcacatgtagttgtgtatctatgcatgaaagagtggtacaagttgcataaaatgttgta |
317 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||| || |
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| T |
2987785 |
ggaggaaattcatgtta-gtaagtcattcttttataatattgtacatgtagttgtgtatctaggcttgaaagattggtacaagttgcataaaatgttata |
2987883 |
T |
|
| Q |
318 |
tttt |
321 |
Q |
| |
|
|||| |
|
|
| T |
2987884 |
tttt |
2987887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 45116793 - 45116491
Alignment:
| Q |
18 |
cttctcactcagaataatcgtgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatctttgcgtgatctgtaaatccata |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |
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| T |
45116793 |
cttctcactcagaataatcatgcatcttctcattcaatcttattcattattctcatgtgaatcagttcatcttcatcttttcgtaatctgtaaatgcatg |
45116694 |
T |
|
| Q |
118 |
ttactttttggtttcttttcaattgaaattttcagtttctgagtagctattgattccaattatttcatttctttatcttgcagaaaaattgccaaatcca |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45116693 |
ttactttttggtttcttctcaattgaaattttcagtttctgagtagctattgatttcaattatttcatttctttatcttgcagaaaaattgccaaatcca |
45116594 |
T |
|
| Q |
218 |
ggaggaaaatcatgttacgtaagtcattcttttataatattgcacatgtagttgtgtatctatgcatgaaagagtggtacaagttgcataaaatgttgta |
317 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||| || |
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| T |
45116593 |
ggaggaaattcatgtta-gtaagtcattcttttataatattgtacatgcagttgtgtatctaggcttgaaagagtggtacaagttgcataaaatgttata |
45116495 |
T |
|
| Q |
318 |
tttt |
321 |
Q |
| |
|
|||| |
|
|
| T |
45116494 |
tttt |
45116491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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