View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2795_low_14 (Length: 280)
Name: NF2795_low_14
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 40280500 - 40280235
Alignment:
| Q |
6 |
atggacatcatcatcaccccctaggcctccaccatttgaatacacgccattaacaccccccacacgccctattgatcctcaaacattcttctattccgaa |
105 |
Q |
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| T |
40280500 |
atggacaccatcatcaccccctaggcctccaccatttgaatacacgccattaacaccctccacacgccctattgatcctcaaacattcttctattccgaa |
40280401 |
T |
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| Q |
106 |
ctcatcacttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcatcaagaac------ |
199 |
Q |
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| T |
40280400 |
ctcatcacttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcatcaagaacaagaac |
40280301 |
T |
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| Q |
200 |
aagatctttctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaac |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40280300 |
aagatctttctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaac |
40280235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 40457858 - 40458115
Alignment:
| Q |
14 |
catcatcaccccctaggcctccaccatttgaatacacgccattaacaccccccacacgccctattgatcctcaaacattcttctattccgaactcatcac |
113 |
Q |
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| T |
40457858 |
catcatcaccccctagacctccaccatttgaatacacgccattaacaccctccacacgccctattgatcctcaaacattcttctattccgaactcatcac |
40457957 |
T |
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| Q |
114 |
ttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcat------caagaacaagatctt |
207 |
Q |
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| T |
40457958 |
ttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcatcaagaacaagaacaagatctt |
40458057 |
T |
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| Q |
208 |
tctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaac |
265 |
Q |
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| T |
40458058 |
tctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaac |
40458115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 40285452 - 40285310
Alignment:
| Q |
36 |
accatttgaatacacgccattaacaccccccacacg---ccctattgatcctcaaacattcttctattccgaactcatcacttctcttcctcgtcctcct |
132 |
Q |
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| T |
40285452 |
accatctgaatacacaccatcaacaccccgcacgcgtctccctattgatccacagacattcttctattccgaactcataaccaatcttcctcatcctcct |
40285353 |
T |
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| Q |
133 |
aattttgactctaaccctaataatcttgccctaattcccaaat |
175 |
Q |
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| T |
40285352 |
aattttgactctgaccttgataatcttgccctaatccccaaat |
40285310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 40280856 - 40280807
Alignment:
| Q |
11 |
catcatcatcaccccctaggcctccaccatttgaatacacgccattaaca |
60 |
Q |
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|||||||||| || |||||||||||||||| ||||||||| ||||||||| |
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| T |
40280856 |
catcatcatcgccacctaggcctccaccatctgaatacacaccattaaca |
40280807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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