View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2795_low_17 (Length: 257)
Name: NF2795_low_17
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 35211989 - 35212222
Alignment:
| Q |
11 |
atgaacgtcttattggtttcactgttctgtctcaccagcatagtagcggagcaaacgtacaaacataggcacttcaatatttacagcttgctcataaagc |
110 |
Q |
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| T |
35211989 |
atgaacgtcttattggtttcactgttctgtctcaccagcatagtagcggagcaaacgtacaaacataggcacttcaatatttacagcttgctcataaagc |
35212088 |
T |
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| Q |
111 |
ttgccgttattccatgtttccaatgccgcaagttcatcgttgtgtttctcaaccaaatcagcaacacgcaataggatccgtgatctttcctgcaggggta |
210 |
Q |
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| T |
35212089 |
ttgccgttattccatgtttccaatgccgcaagttcatcgttgtgtttctcaaccaaatcagcaacacgcaataggatccgtgatctttcctgcaggggta |
35212188 |
T |
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| Q |
211 |
agacttaagagacattaatgtaattggttaaaat |
244 |
Q |
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| T |
35212189 |
agacttaagagacattaatgtaatcggttaaaat |
35212222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 43999916 - 44000046
Alignment:
| Q |
44 |
accagcatagtagcggagcaaacgtacaaacataggcacttcaatatttacagcttgctcataaagcttgccgttattccatgtttccaatgccgcaagt |
143 |
Q |
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| T |
43999916 |
accagcatagtagcgaaataaacgcacaaacataggtacttcagctttggcagcctgttcataaagctttccattgttccatgcctccagagctgcaatc |
44000015 |
T |
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| Q |
144 |
tcatcgttgtgtttctcaaccaaatcagcaa |
174 |
Q |
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| T |
44000016 |
tcatcattgtgcttctcaaccaaatcagcaa |
44000046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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