View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2795_low_19 (Length: 250)
Name: NF2795_low_19
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 46635808 - 46636048
Alignment:
| Q |
1 |
cttgaggtggggtttttcatgtttatcgttttttcgtaaccatttacaaaacaatgtaacaattccatacggagagtttcatacttatagttttcaaatc |
100 |
Q |
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| T |
46635808 |
cttgaggtggggtttttcatgtttatcgttttttcgtaaccatttacaaaacaatgtaacaattccatacggagagtttcatacttatagttttcaaatc |
46635907 |
T |
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| Q |
101 |
taaattcttttgttaacttgtatgatgctttcaaaaaccagtggctttggtacatatgaatggttggttggttggtgagtaacactatattacttttatg |
200 |
Q |
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| T |
46635908 |
taaattcttttgttaacttgtatgatgctttcaaaaaccagtggctttggtacatatgaatggttggttggttggtgagtaacactatattacttttatg |
46636007 |
T |
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| Q |
201 |
ccttgttataattcatacttaaagtatcctcttgatgatgt |
241 |
Q |
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| T |
46636008 |
ccttgttataattgatacttaaagtatgctcttgatgatgt |
46636048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 46617117 - 46617351
Alignment:
| Q |
2 |
ttgaggtggggtttttcatgtttatcgttttttc----gtaaccatttacaaaacaatgtaacaattccatacggagagtttcatacttatagttttcaa |
97 |
Q |
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| T |
46617117 |
ttgaggtggatttttttatgtttatcgtttttttttttgtaaccatttagaaaacaaagtaacaattccacagggatagttggatactcatagttttgaa |
46617216 |
T |
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| Q |
98 |
atctaaattcttttgttaacttgtatgatgctttcaaaaaccagtggctttggtacatatgaatggttggttggttggtgagtaacactatattactttt |
197 |
Q |
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| T |
46617217 |
atctaaattctttcattaagtagaatgatgctttcaaaaaccagtggc-atggttaatatgaa--------tggttgatgagtaacactgctttactttt |
46617307 |
T |
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| Q |
198 |
atgccttgttataattcatacttaaagtatcctcttgatgatgt |
241 |
Q |
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| T |
46617308 |
atgcctcgtcacaactgatactttaagtatgctcttgatgatgt |
46617351 |
T |
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