View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2795_low_2 (Length: 568)
Name: NF2795_low_2
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Original strand, 39470981 - 39471513
Alignment:
| Q |
18 |
cacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatacctgnnnnnnnnnncctttctttaggaacaggaatagatga |
117 |
Q |
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| T |
39470981 |
cacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatacctgttttttttttcctttctttaggaacaggaatagatga |
39471080 |
T |
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| Q |
118 |
attcgtgtagagatttagtatcataataaaagaaatctttgtgagtgatgtcatggctttgcgggatggcatgatatgagaactttatggcatgagattg |
217 |
Q |
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| T |
39471081 |
attcgtgtagagatttagtatcataataaaagaaacctttgtgagtgatgtcatggctttgcgggatggcatgatatgagaactttatggcatgagattg |
39471180 |
T |
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| Q |
218 |
aaatgtttgtctttatattatttatgggagaattgatggatggtgaaggctatttactactaccttatatatggaccgtgcaagtttttgtggtgtacaa |
317 |
Q |
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| T |
39471181 |
aaatgtttgtctttatattatttatgggagaattgatggatggtgaaggctatttactactaccttatatatggaccgtgcaagtttttgtggtgtacaa |
39471280 |
T |
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| Q |
318 |
gaatatgtaaaaactatctgnnnnnnnnnnnnnnnnnntgtaaaactagattgttgttattatcttgttggaattatttattattcaataatannnnnnn |
417 |
Q |
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| T |
39471281 |
gaatatgtaaaaactatctg-aaaaaaggaaaaaaaaatgtaaaactggattgttgttattatcttgttggaattatttattattcaataatatgtgtgg |
39471379 |
T |
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| Q |
418 |
nnnnnnnnnnnnnggcatgcgtatttcaaaggacaatgcagtgcaggctaccacttgtttttactatatatggatgtggactgttttggagctttgtaga |
517 |
Q |
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| T |
39471380 |
tgtgtggtgtgtgggcatgcgtatgacaaaggacaatgcagtgcaggctaccacttgtttttactatatatggatgtggactgttttggagctttgtaga |
39471479 |
T |
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| Q |
518 |
cctgtatttttgacatggtcctgactgcaatttt |
551 |
Q |
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| T |
39471480 |
cctgtatttttgacatggtcctgactgcaatttt |
39471513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 39464853 - 39464898
Alignment:
| Q |
134 |
agtatcataataaaagaaatctttgtgagtgatgtcatggctttgc |
179 |
Q |
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| T |
39464853 |
agtatcataataagaggaatctttgtgagtgatgtcatggctttgc |
39464898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 487 - 528
Target Start/End: Original strand, 39465092 - 39465133
Alignment:
| Q |
487 |
atggatgtggactgttttggagctttgtagacctgtattttt |
528 |
Q |
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| T |
39465092 |
atggatatgaactgttttggagctttgtagacctgtattttt |
39465133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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