View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2795_low_20 (Length: 237)
Name: NF2795_low_20
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_low_20 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3352047 - 3352267
Alignment:
| Q |
1 |
tctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgataagtatatcctattggattatgcaccgggaactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
3352047 |
tctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcatgaatgataagtatatcctattggactatgcaccgggaactg |
3352146 |
T |
|
| Q |
101 |
gcaacgataagattttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattgttcctttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3352147 |
gcaacgataagattttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattgttcctttaa |
3352246 |
T |
|
| Q |
201 |
caccgataacaacgaagcatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3352247 |
caccgataacaacgaagcatt |
3352267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 42046550 - 42046335
Alignment:
| Q |
1 |
tctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgat---aagtatatcctattggattatgcaccgggaa |
97 |
Q |
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| T |
42046550 |
tctggttacataagggctgcttttcgttcatctaggcacaatgaagcttacattttcatcaatgatgataagtacgtgctattggattatgctcctggaa |
42046451 |
T |
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| Q |
98 |
ctggcaacgataagattttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattgttcctt |
197 |
Q |
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| T |
42046450 |
ccaccaacgataagattttgcatgggccatctcttgttagtgatgggtttaaatcacttgctcctacaatatttcaaagctatgcaattgattgtgcatt |
42046351 |
T |
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| Q |
198 |
taacaccgataacaac |
213 |
Q |
| |
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| |||||||||||||| |
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| T |
42046350 |
tgacaccgataacaac |
42046335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 42471733 - 42471524
Alignment:
| Q |
2 |
ctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgataagtatatcctattggattatgcaccgggaactgg |
101 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || | |||||||||||||| |||||||| |
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| T |
42471733 |
ctggttacattaatgctgcatttcgttcatctaggaacaacgaagcttactttttcatgaatgataaatacgtactattggattatgctccgggaacccc |
42471634 |
T |
|
| Q |
102 |
caacgataagattttgtatgggcc-gagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattgttcctttaa |
200 |
Q |
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||||||| || ||||| | || || || | ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||| |||||| ||||| | |
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| T |
42471633 |
caacgatgaggttttgaacggacctgaat-ttgttcgtgatgggttccgttcacttgctcataccgtatttggaagctatggaattgattgtgcctttga |
42471535 |
T |
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| Q |
201 |
caccgataaca |
211 |
Q |
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||| ||||||| |
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| T |
42471534 |
cacggataaca |
42471524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 63737 - 63526
Alignment:
| Q |
1 |
tctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgataagtatatcctattggattatgcaccgggaactg |
100 |
Q |
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|||||||||||| |||| | ||||||||||||||| || |||||||| ||||||||||| ||||||||| | |||||||||||||| || ||||| |
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| T |
63737 |
tctggttacataaatgcagtatttcgttcatctagaaaaaatgaagcatactttttcatcaatgataagctcttgctattggattatgctcccggaacca |
63638 |
T |
|
| Q |
101 |
gcaacgataagattttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattgttcctttaa |
200 |
Q |
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|||||||||||||||| ||||| || | | |||||||| |||||||| ||| |||| | |||||| |||||||||| |||||||||||||| ||||| | |
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| T |
63637 |
gcaacgataagattttatatggacctatttttgttcgccatgggtttccatcgcttgataataccaaatttggaagcaatggaatagattgtgcctttga |
63538 |
T |
|
| Q |
201 |
caccgataacaa |
212 |
Q |
| |
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||||||| |||| |
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| T |
63537 |
caccgatgacaa |
63526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 37681 - 37467
Alignment:
| Q |
1 |
tctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgataagtatatcctattggattatgcaccgggaactg |
100 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||| | | ||||||||||| || ||||| |
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| T |
37681 |
tctggttacataaatgctgtatttcgttcatctaggaaaaatgaagcatactttttcatcaatgataagctcttggttttggattatgctcccggaacca |
37582 |
T |
|
| Q |
101 |
gcaacgataagattttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattgttcctttaa |
200 |
Q |
| |
|
|||||||||||||||| |||| || | |||||||| | |||||| ||| |||| | |||| | |||||||||| |||||||||||||| ||||| | |
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| T |
37581 |
gcaacgataagattttacatggacctgtttttgttcgccacgggtttccatcgcttgataatacaaaatttggaagcaatggaatagattgtgcctttga |
37482 |
T |
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| Q |
201 |
caccgataacaacga |
215 |
Q |
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||||||| ||||||| |
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| T |
37481 |
caccgatgacaacga |
37467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 14452440 - 14452548
Alignment:
| Q |
113 |
ttttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattgttcctttaacaccgataacaa |
212 |
Q |
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||||||||||||| | |||||| || ||||| |||| ||||| ||||||||| |||||||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
14452440 |
ttttgtatgggcctactcttgtccgtgatggttttaaatcacatgctcatacaatatttggaagctatggaattgattgtgcctttgacaccgataacaa |
14452539 |
T |
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| Q |
213 |
cgaagcatt |
221 |
Q |
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||| ||||| |
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| T |
14452540 |
cgaggcatt |
14452548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 14452322 - 14452392
Alignment:
| Q |
1 |
tctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgataagta |
71 |
Q |
| |
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|||||||| || |||||| | |||||||||||| | ||||||||||||||||||||| ||||||||||| |
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| T |
14452322 |
tctggttatgtaaatgctgtaattcgttcatctaagtccaatgaagcttactttttcatcaatgataagta |
14452392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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