View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2795_low_6 (Length: 455)
Name: NF2795_low_6
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 1394933 - 1395364
Alignment:
| Q |
19 |
aggatacaataatctaaaatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1394933 |
aggatacaataatctaaaatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaataacttacaattcataacggct |
1395032 |
T |
|
| Q |
119 |
acaagtcacaatacttggcttgactagtaaatatagttcaagactttgatattttattcatctcaaaacatactaatttaatatacaagattttggatta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395033 |
acaagtcacaatacttggcttgactagtaaatatagttcaagactttgatattttattcatctcaaaacatactaatttaatatacaagattttggatta |
1395132 |
T |
|
| Q |
219 |
taaatagttcaagacttataattatgcataacataaacacaattatgcgctcaatgtcacattttgtttgaaacttcacaaaagattaattataatataa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395133 |
taaatagttcaagacttataattatgcataacataaacacaattatgcgctcaatgtcacattttgtttgaaacttcacaaaagattaattataatataa |
1395232 |
T |
|
| Q |
319 |
acatcagacgatagttcatagtagattactcagccacatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcgt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1395233 |
acatcagacgatagttcatagtagattactcagccatatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttagtcgt |
1395332 |
T |
|
| Q |
419 |
ggagtttctactaatttatagttcttctcact |
450 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
1395333 |
ggagtttctactaatttatagttcttatcact |
1395364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 1406177 - 1406332
Alignment:
| Q |
36 |
aatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggctacaagtcacaatacttg |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1406177 |
aatatgatatcgaaacgacatttgatacttagatatttaatattactgacggaaacatcaacaacttacaattcataacggctacaagtcacaatacttg |
1406276 |
T |
|
| Q |
136 |
gcttgactagtaaatatagttcaagactttgatattttattcatctcaaaacatacta |
193 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1406277 |
gcttgactagtaa--atagttcaagactttgatattttattcatctcaaaacatacta |
1406332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 1406345 - 1406453
Alignment:
| Q |
342 |
gattactcagccacatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcgtggagtttctactaatttatagtt |
441 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1406345 |
gattactcagccatatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcatggagtttctactaatttatagtt |
1406444 |
T |
|
| Q |
442 |
cttctcact |
450 |
Q |
| |
|
||| ||||| |
|
|
| T |
1406445 |
cttatcact |
1406453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 42409350 - 42409130
Alignment:
| Q |
22 |
atacaataatctaaaatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggctaca |
121 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||| |||||| ||||||||||||| ||| |||| ||||||||||| ||||| ||||||||| |
|
|
| T |
42409350 |
atacaataatctagaatatgatatcgaactgatatttaatacttggatatttaatattatagactgaaatatcaacaacttccaatttgtaacggctaag |
42409251 |
T |
|
| Q |
122 |
agtcacaatacttggcttgactagtaaatatagttcaagac---tttgatatttta-----ttcatctcaaaacatactaatttaatatacaagattttg |
213 |
Q |
| |
|
||| ||||||||| |||||||||||||| ||||||||||| |||| ||||||| ||| |||||||||||| ||| |||||||||| ||| | |
|
|
| T |
42409250 |
agttacaatacttagcttgactagtaaa-gtagttcaagactaatttggtattttacattgttcgtctcaaaacataataacctaatatacaacattctt |
42409152 |
T |
|
| Q |
214 |
gattataaatagttcaagactt |
235 |
Q |
| |
|
|| ||| |||| |||||||||| |
|
|
| T |
42409151 |
gactatcaataattcaagactt |
42409130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 42408993 - 42408938
Alignment:
| Q |
355 |
catccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctact |
411 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||| | |||||||| |||| |
|
|
| T |
42408993 |
catccttaccattgaatacatgttcatctaaaaa-ataaattgagatgagatttact |
42408938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University