View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2795_low_8 (Length: 408)
Name: NF2795_low_8
Description: NF2795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2795_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 23 - 394
Target Start/End: Complemental strand, 43312507 - 43312134
Alignment:
| Q |
23 |
taattgcatttagctgtgaaaataatcaagtgaataatcccaagtgatttatagatttaatttaaggacaaattgttcgaaagaaaccggactcaaattc |
122 |
Q |
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| T |
43312507 |
taattgcatttagctatgaaaataatcaagtgaataatctcaagtgatttatagacttaatttaaggacaaattgttcgaaaaaaaccggactcaaattc |
43312408 |
T |
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| Q |
123 |
cattaaaattactttttggatagaatttacttacctccaatttaactctcgatcataagaatctcattacgtttgaaactgcaaagttnnnnnnnnttga |
222 |
Q |
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| T |
43312407 |
cattaaaactactttttggatagaatttacttacctccaatttaactctcgatcataagaatctcattacgtttgaaactgcaaagttaaaaaaaataga |
43312308 |
T |
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| Q |
223 |
agagaattttatgtttaagttatttttagatcattcatccgtaatggattgttccttgtggagcttttaataagctcaaaat--tatatgtcattatttt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
43312307 |
agagaattttatgtttaagttatttttagatcattcatccgtaatggattgttccttgtggagcttgtaataagctcaaaattatatatgtcattatttt |
43312208 |
T |
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| Q |
321 |
gttgctatttgcacttttatatatagcatagctgcatagaatttgattggatgaataaattctctacttcattt |
394 |
Q |
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| T |
43312207 |
gttgctatttgcacttttatatatagcatagctgcatagcatttgattggatgaataaattctctacttcattt |
43312134 |
T |
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