View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2796_high_1 (Length: 593)
Name: NF2796_high_1
Description: NF2796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2796_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Original strand, 8891139 - 8891705
Alignment:
| Q |
19 |
tacacaacaacgaaatcaactttaattgatttcgatattgtgtaatatgacccgtgaatttgagattggacggttgtgattgaaaactgtgactcagtta |
118 |
Q |
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| T |
8891139 |
tacacaacaacgaaatcaactttaattgatttcgatattgtgtaatatgacccgtgaatttgagattggacggttgtgattgaaaactgtgactcagtta |
8891238 |
T |
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| Q |
119 |
aatactaagaatctgtcttgaagcatggattgcattttgtttggttgtgatccctttggagtcattgctt-----gtctaggggagtggtgacagctgtt |
213 |
Q |
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| T |
8891239 |
aatgctaagaatctgtcttgaagcatggattgcattttgtgtggttgtgatccctttggagtcattgctttgcttgtctaggggagtggtgacagctgtt |
8891338 |
T |
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| Q |
214 |
tgttgtgtgtagtagtagtaagaatcaagtactagaactggttcagagtacatgcgtagcatagtaacagtataaaatattgttttaattttaactactt |
313 |
Q |
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| T |
8891339 |
tgttgtgtgtagtagtagtaagaatcaagtactagaactggttcagagtacatgcgtagcatagtaacagtataaaatattgttttaattttaactactt |
8891438 |
T |
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| Q |
314 |
tatagnnnnnnngctggatttcattgtgttttctcacctgtttttggtgaagacaaatactgaatagacttatcttgacaagtacaatatgtactaccag |
413 |
Q |
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| T |
8891439 |
tatagtttttttgctggatttcattgtgttt-ctcacctgtttttggtgaagacaaatactgaatagacttatcttgactagtacaatatgtactaccag |
8891537 |
T |
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| Q |
414 |
aatctcgttttttgaacaagtgagatcaagctctaaaccaaccctttttcttgttcttggtgatttcttgttgctttgcaccatatattctcccaatgca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8891538 |
aatctcgttttttgaacaagtgagatcaagctctaaaccaaccctttttcttgttcttggtgatttcttgttgctttgtaccatatattctcccaatgca |
8891637 |
T |
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| Q |
514 |
cttttatatggatgcattattttgtgtaacactagatgggatgttacgaggttcatgcatgatggttc |
581 |
Q |
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| T |
8891638 |
cttttatatggatgcattattttgtgtaacactagatgggatgttacgaggttcatgcatgatggttc |
8891705 |
T |
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