View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2796_high_2 (Length: 513)
Name: NF2796_high_2
Description: NF2796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2796_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 502
Target Start/End: Original strand, 40669469 - 40669944
Alignment:
| Q |
17 |
catgatcttcgtcacgccgcagggttggatctacaccgtgtgattccccagctctccgactccctccgtctctgccacaaaatggaaaacattcatgtgc |
116 |
Q |
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| T |
40669469 |
catgatcttcttcacgccgccgggttggatctacactgtgtgattcctcacctctccgactccctccgtctctgccacaaaacggaaaacattcatgtgc |
40669568 |
T |
|
| Q |
117 |
ctcctccactgccacatcaaagtctaatggaaatataagttctaacaggcggctgaaaacgtatgggagacaccgctttgaggatcatatagtcctttat |
216 |
Q |
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|||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
40669569 |
ctcctccactgccacatcgacgtctaatggaaatgtaagttctaacaggcggctgaaaacgtgtgggagacaccgctttgaggatcatatagtccttttt |
40669668 |
T |
|
| Q |
217 |
tggtggtgttttcaatcagaatcatcacaatctacataggcttaatcgaaaagaaggattgaagaaatgtgtttaaagtctgccaccactcataactatc |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
40669669 |
tggtggtgttctcaatcagaatcatcacaatctacataggcttaatcgaaaagaaggattaaagaaatgtgtttaaagtctgccaccacccataactatc |
40669768 |
T |
|
| Q |
317 |
accaccaacacaannnnnnnnncttcttccatgcattgaca--nnnnnnnngaagtattcgattgagaatcataaagaactattcttattctacagcttc |
414 |
Q |
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||||||||||||| || || | | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40669769 |
accaccaacacaattt-------ttttttcttccattgacattttttttttgaagtattcgattgagaatcataaagaactattcttattctccagcttc |
40669861 |
T |
|
| Q |
415 |
ttggtttctttcaacccannnnnnnnnnnnnnnnnattattgcggaagaaaataaaatctatctatatcatccattgcgatgatgatg |
502 |
Q |
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| T |
40669862 |
ttggtttctttcaaccta-----tttcttctttttattattgcggaagaaaataaaatctatctatatcatccattgtgattatgatg |
40669944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 17056382 - 17056071
Alignment:
| Q |
17 |
catgatcttcgtcacgccgcagggttggatctacaccgtgtgattccccagctctccgactccctccgtctctgccacaaaatggaaaacattcatgtgc |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
17056382 |
catgatcttcgtcacgccgccgggttggatctacaccgtgtgattcctcacctctccgactccctctgtctctgccacaaaacggaaaacattcatgtgc |
17056283 |
T |
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| Q |
117 |
ctcctccactgccacatcaaagtctaatggaaatataagttctaacaggcggctgaaaacgtatgggagacaccgctttgaggatcatatagtcctttat |
216 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17056282 |
ctcctccactgccacatcggcgtctaatggaaatgtaagttctaacaggtggctgaaaacgtgtgggagacaccgctttgaggatcatatagtcctttat |
17056183 |
T |
|
| Q |
217 |
tggtggtgttttcaatcagaatcatcacaatctacataggcttaatcgaaaagaaggattgaagaaatgtgtttaaagtctgccaccactcataactatc |
316 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17056182 |
tggtggtgttctcaatcagagtcatcacaatctacataggcttaatcgaaaagaaggattgaagaaatgtgtttaaagtctgccaccacccataactatc |
17056083 |
T |
|
| Q |
317 |
accaccaacaca |
328 |
Q |
| |
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|||||||||||| |
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| T |
17056082 |
accaccaacaca |
17056071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 366 - 502
Target Start/End: Complemental strand, 17056059 - 17055928
Alignment:
| Q |
366 |
gaagtattcgattgagaatcataaagaactattcttattctacagcttcttggtttctttcaacccannnnnnnnnnnnnnnnnattattgcggaagaaa |
465 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
17056059 |
gaaggattcgattgagaatcataaagaactattcttattctccagcttcttggtttctttcaaccca-----tttcttctttttatttttgcggaagaaa |
17055965 |
T |
|
| Q |
466 |
ataaaatctatctatatcatccattgcgatgatgatg |
502 |
Q |
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||||||||||||||||||||| |||| |||||||||| |
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| T |
17055964 |
ataaaatctatctatatcatcgattgtgatgatgatg |
17055928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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