View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2796_low_11 (Length: 237)
Name: NF2796_low_11
Description: NF2796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2796_low_11 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 3449334 - 3449131
Alignment:
| Q |
16 |
cacaagacaccaccgtcacagtctacaacaccaccgcaatcaccaccgacccactccaaaccccatactcattcaaactatccctcacacaaaccctccg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3449334 |
cacaagacaccaccgtcacagtctacaacaccaccgcaatcaccaccgacccactccaaaccccatactcattcaaactatccctcacacaaaccctccg |
3449235 |
T |
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| Q |
116 |
tggcggcgcaattttccaggtcaccaacctccaccaagccaaaatcgtcgaacaagccggcgcctgcgccgtcaccgtctccgatcaacaacgcatgacc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3449234 |
tggcggcgcaattttccaggtcaccaacctccaccaagccaaaatcgctgaacaagccggcgcctgcgccgtcaccgtctccgatcaacaacgcatgacc |
3449135 |
T |
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| Q |
216 |
gatc |
219 |
Q |
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|||| |
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| T |
3449134 |
gatc |
3449131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 35038781 - 35038978
Alignment:
| Q |
22 |
acaccaccgtcacagtctacaacaccaccgcaatcaccaccgacccactccaaaccccatactcattcaaactatccctcacacaaaccctccgtggcgg |
121 |
Q |
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|||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||| |
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| T |
35038781 |
acaccaccgtcacagtctacaaaatcactgcaatcaccaccgacccactctaaaccccatactcattcaaactatccctcacccaaaccctatgcggcgg |
35038880 |
T |
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| Q |
122 |
cgcaattttccaggtcaccaacctccaccaagccaaaatcgtcgaacaagccggcgcctgcgccgtcaccgtctccgatcaacaacgcatgaccgatc |
219 |
Q |
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| T |
35038881 |
cgcaattctccacgtcaccaatctccaccaagccaaaatggtcgaacaagtcggcgcctgtgtcgtcaccgtctccgatcaacaacgtatgaccgatc |
35038978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 41587560 - 41587756
Alignment:
| Q |
22 |
acaccaccgtcacagtctacaacaccaccgcaatcaccaccgacccactccaaaccccatactcattcaaactatccctcacacaaaccctccgtggcgg |
121 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||| |
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| T |
41587560 |
acaccaccgtcacagtctacaaaaccaccgcaatcaccaccgacccactctaaaccccatactcattcaaactatccctcac-caaaccctctgcggcgg |
41587658 |
T |
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| Q |
122 |
cgcaattttccaggtcaccaacctccaccaagccaaaatcgtcgaacaagccggcgcctgcgccgtcaccgtctccgatcaacaacgcatgaccgatc |
219 |
Q |
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||||||| |||| |||||||| ||||||||||||||||| | | |||||| |||| | || ||| | |||||||||||||||||||| |||||||||| |
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| T |
41587659 |
cgcaattctccacgtcaccaatctccaccaagccaaaatggccaaacaagtcggcacatgtgcctttaccgtctccgatcaacaacgtatgaccgatc |
41587756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 115 - 1
Alignment:
| Q |
16 |
cacaagacaccaccgtcacagtctacaacaccaccgcaatcaccaccgacccactccaaaccccatactcattcaaactatccctcacacaaaccctccg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115 |
cacaagacaccaccgtcacagtctacaacaccaccgcaatcaccaccgacccactccaaaccccatactcattcaaactatccctcacacaaaccctccg |
16 |
T |
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| Q |
116 |
tggcggcgcaatttt |
130 |
Q |
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||||||||||||||| |
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| T |
15 |
tggcggcgcaatttt |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 46205409 - 46205222
Alignment:
| Q |
22 |
acaccaccgtcacagtctacaacaccaccgcaatcaccaccgacccactccaaaccccatactcattcaaactatccctcacacaaaccctccgtggcgg |
121 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
46205409 |
acaccactgtcacagtctacaaaaccaccgcaatcaccaccgacccactctaaaccccatactcattcaaactatccctcacccaaaccctctgtggcgg |
46205310 |
T |
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| Q |
122 |
cgcaattttccaggtcaccaacctccaccaagccaaaatcgtcgaacaagccggcgcctgcgccgtcaccgtctccgatcaacaacgcatgaccgatc |
219 |
Q |
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||||||| |||| || |||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||| | |||||||||| |
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| T |
46205309 |
cgcaattctccacgt----------caccaagccaaaatggccgaacaagtcggcgcctgtgccgtcaccgtctccgatcaacaatgtatgaccgatc |
46205222 |
T |
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