View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2796_low_12 (Length: 237)

Name: NF2796_low_12
Description: NF2796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2796_low_12
NF2796_low_12
[»] chr7 (1 HSPs)
chr7 (31-197)||(9238024-9238191)
[»] chr6 (5 HSPs)
chr6 (31-197)||(14415928-14416096)
chr6 (31-170)||(14322946-14323086)
chr6 (31-202)||(11946717-11946887)
chr6 (56-200)||(14666695-14666841)
chr6 (135-188)||(17715760-17715813)
[»] chr8 (2 HSPs)
chr8 (31-187)||(28244677-28244834)
chr8 (149-186)||(45349374-45349411)
[»] scaffold0832 (1 HSPs)
scaffold0832 (31-197)||(4-172)
[»] chr3 (2 HSPs)
chr3 (31-190)||(13852150-13852307)
chr3 (56-201)||(1658664-1658811)
[»] scaffold0838 (1 HSPs)
scaffold0838 (31-170)||(1-141)
[»] chr5 (2 HSPs)
chr5 (56-186)||(31406255-31406386)
chr5 (56-201)||(24047019-24047167)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 9238024 - 9238191
Alignment:
Q  31 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaatttttggtcaacaatagtcaaaataaaataaataagaaaagtatta 130  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  9238024 tacaagtattaaaagagtaacaagtacccatttattattcattcacgtgttaaattttttgtcaacaatagtcaaaataaaataaataaaaaaagtatta 9238123  T
Q  131 taaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcaca-agatctca 197  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9238124 taaactattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 9238191  T

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Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 14416096 - 14415928
Alignment:
Q  31 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 129  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  14416096 tacaagtattaaaagagtaacaagtacccattcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 14415997  T
Q  130 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcaca-agatctca 197  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14415996 ataaacaattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 14415928  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 14323086 - 14322946
Alignment:
Q  31 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 129  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  14323086 tacaagtattaaaagagtaacaagtacccattcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 14322987  T
Q  130 ataaaccattgagaaacacttttctctctcttccctcaaaa 170  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  14322986 ataaacaattgagaaacacttttctctctcttccctcaaaa 14322946  T

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Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 11946717 - 11946887
Alignment:
Q  31 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaatttt-tggtcaacaatagtcaaaataaaataaataagaaaagtatt 129  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  11946717 tacaagtattaaaagagtaacaagtacc-attcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaataaataaataaagtatt 11946815  T
Q  130 ataaacca-ttgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacaagatctcaattcc 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  | |||||||||||||    
T  11946816 ataaaccatttgagaaacacttttctctctcttccctcaaaaatcacctttctctct--cgagatctcaattcc 11946887  T

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Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 14666695 - 14666841
Alignment:
Q  56 acccattgtttattcattcacgtgttaaat-ttttggtcaacaatagtcaaaataaaataaataagaaaagtattataaaccattgagaaacacttttct 154  Q
    |||||||  ||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||| |||||| |||||| ||||| ||||||||||||||    
T  14666695 acccattcattattcattcacgtgttaaaaattttagtcaacaatagtcaaaataaaataagtaaaaaaagtgttataagccattcagaaacacttttct 14666794  T
Q  155 ctctcttccctcaaaaatcacttttctctctca-caagatctcaatt 200  Q
    ||||||| ||| ||||||||||||||||||||| | |||||||||||    
T  14666795 ctctcttacctaaaaaatcacttttctctctcaccgagatctcaatt 14666841  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 17715760 - 17715813
Alignment:
Q  135 ccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcac 188  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  17715760 ccattgagaaacacttttctctctcttccgtcaaaaatctcttttctctctcac 17715813  T

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Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 28244677 - 28244834
Alignment:
Q  31 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaatttt-tggtcaacaatagtcaaaataaaataaataagaaaagtatt 129  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  28244677 tacaagtattaaaagagtaacaagtacccattcattattcattcacgtgttaaattttttggtcaacaataatcaaaataaaataaataaaaaaagtatt 28244776  T
Q  130 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctca 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28244777 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctca 28244834  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 45349374 - 45349411
Alignment:
Q  149 ttttctctctcttccctcaaaaatcacttttctctctc 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45349374 ttttctctctcttccctcaaaaatcacttttctctctc 45349411  T

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Target: scaffold0832 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 172 - 4
Alignment:
Q  31 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 129  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  172 tacaagtattaaaagagtaacaagtacccattcattattcattcaagtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 73  T
Q  130 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcaca-agatctca 197  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  72 ataaacaattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 4  T

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Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 13852307 - 13852150
Alignment:
Q  31 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 129  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||   |||||||    
T  13852307 tacaagtattaaaagagtaacaagtaccgattcattattcattcacgtgttaaattttttggtcaacaatagtcaaaataaaacaaaaaa---aagtatt 13852211  T
Q  130 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacaa 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13852210 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacaa 13852150  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 1658811 - 1658664
Alignment:
Q  56 acccattgtttattcattcacgtgttaaatt-tttggtcaacaatagtcaaaataaaataaataagaaaagtattataaaccattgagaaacacttttct 154  Q
    |||||||  |||||||||||| |||||||   ||| |||||||||||||||||||||| || ||| |||||| |||||| | ||||||||||||||||||    
T  1658811 acccattcattattcattcacatgttaaaaaatttagtcaacaatagtcaaaataaaaaaagtaaaaaaagtgttataagcaattgagaaacacttttct 1658712  T
Q  155 ctctcttccctcaaaaatcacttttctctctca-caagatctcaattc 201  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  1658711 ctctcttccctcaaaaatcacttttctctctcaccgagatctcaattc 1658664  T

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Target: scaffold0838 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 141 - 1
Alignment:
Q  31 tacaagtattaaaagagtaacaagtacccattgtttattcattcacgtgttaaattttt-ggtcaacaatagtcaaaataaaataaataagaaaagtatt 129  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  141 tacaagtattaaaagagtaacaagtacccattcattattcattcaagtgttaaattttttggtcaacaatagtcaaaataaaataaataaaaaaagtatt 42  T
Q  130 ataaaccattgagaaacacttttctctctcttccctcaaaa 170  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  41 ataaacaattgagaaacacttttctctctcttccctcaaaa 1  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 31406255 - 31406386
Alignment:
Q  56 acccattgtttattcattcacgtgttaaat-ttttggtcaacaatagtcaaaataaaataaataagaaaagtattataaaccattgagaaacacttttct 154  Q
    |||||||  ||||||||||||||||||||  |||| ||||||||||||||||| ||||||  ||| |||||| ||||||  |||||||||||||||||||    
T  31406255 acccattcattattcattcacgtgttaaaaattttagtcaacaatagtcaaaacaaaataggtaaaaaaagtgttataagacattgagaaacacttttct 31406354  T
Q  155 ctctcttccctcaaaaatcacttttctctctc 186  Q
    ||||||||||||||||| ||||||||||||||    
T  31406355 ctctcttccctcaaaaaacacttttctctctc 31406386  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 24047167 - 24047019
Alignment:
Q  56 acccattgtttattcattcacgtgttaaat-ttttggtcaacaatagtcaaaataaaataaataagaaaa-gtattataaaccattgagaaacacttttc 153  Q
    |||||||  ||||| ||||||||||||||  |||| || ||||||||||||| |||||||| ||| |||| || |||||| | |||||||||||||||||    
T  24047167 acccattcattatttattcacgtgttaaaaattttagttaacaatagtcaaattaaaataagtaaaaaaatgtgttataagctattgagaaacacttttc 24047068  T
Q  154 tctctcttccctcaaaaatcacttttctctctca-caagatctcaattc 201  Q
    |||||||||||||||||||||||||||||||| | | ||||||||||||    
T  24047067 tctctcttccctcaaaaatcacttttctctcttaccgagatctcaattc 24047019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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