View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2796_low_9 (Length: 250)
Name: NF2796_low_9
Description: NF2796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2796_low_9 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 24940163 - 24939920
Alignment:
| Q |
7 |
tccaagaatatatcaagtagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgt |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24940163 |
tccaacaatatatcaagtagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattttgt |
24940064 |
T |
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| Q |
107 |
caaacctgtccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24940063 |
caaacctgtccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatccgacacattaaacttccctgcaag |
24939964 |
T |
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| Q |
207 |
ctcggcagtgtctttcaccatcttccgaatgtccttaacttcac |
250 |
Q |
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| T |
24939963 |
ctcggcagtgtctgtcaccatcttccgaatgtccttaacttcac |
24939920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 25168782 - 25168544
Alignment:
| Q |
7 |
tccaagaatatatcaagtagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgt |
106 |
Q |
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||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||||||| |
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| T |
25168782 |
tccaacaaaatatcaagtaaatccctaacatgatgagcaccttcacctcttttcttcttttcctcttgatgctcctttgtcaccctatccatcattgtgt |
25168683 |
T |
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| Q |
107 |
caaacctgtccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaag |
206 |
Q |
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| T |
25168682 |
caaacctatcccgaatccttttcagctttttattcattccataaaaatctatattcttaaaaaaccagataaaatccgacacattcaccttccctacaag |
25168583 |
T |
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| Q |
207 |
ctcggcagtgtctttcaccatcttccgaatgtccttaac |
245 |
Q |
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| T |
25168582 |
ctctgcggtctctgtcaccatcttcctaatctctttaac |
25168544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 19151 - 18967
Alignment:
| Q |
55 |
cttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgtccctaattcttttaagccttttattcattccataaaaat |
154 |
Q |
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| T |
19151 |
cttttcttcatttccacttgatgctcccttatcaccctctccatcaatgtgtcaaacctctccataaccactttaagccttttgttaaatccttgcatat |
19052 |
T |
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| Q |
155 |
ccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaagctcggcagtgtctttcaccatcttccgaatgtc |
239 |
Q |
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| T |
19051 |
cccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcctaatgtc |
18967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 24561 - 24409
Alignment:
| Q |
54 |
tcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgtccctaat-tcttttaagccttttattcattccataaaa |
152 |
Q |
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|||||||||| |||||||| ||||||| || | || ||||| ||||||||||| ||| ||| | ||| ||||||| ||||||| || | ||| | || |
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| T |
24561 |
tcttttcttcatttcctcttgatgctcccttatgacactctcaatcattgtgtcgaacatgttcataagctctttta-gccttttgttaaatccttgcaa |
24463 |
T |
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| Q |
153 |
atccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaag |
206 |
Q |
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| T |
24462 |
atcccaattcttaaaaaaccaaataaaatccgacaaattaaactgccctccaag |
24409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 10909 - 10859
Alignment:
| Q |
156 |
caaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaag |
206 |
Q |
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| T |
10909 |
caaattcttacaaaaccaaatatattctaacatactaaacttccctgcaag |
10859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 11224 - 11307
Alignment:
| Q |
126 |
tttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaagctc |
209 |
Q |
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| T |
11224 |
tttaagccttttatgtattccttgtaaatccaaattcttgcaaacccaaataaaatctgacacattaaacgtccctccaagctc |
11307 |
T |
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