View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_high_10 (Length: 383)
Name: NF2797_high_10
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 31653196 - 31652837
Alignment:
| Q |
15 |
aattagctcggctccatgagactcagaagcagatttgagtttcttctcactcaaacttagccttttaactttaccgccatcaacttttagtctatccttc |
114 |
Q |
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| T |
31653196 |
aattagctcggctccatgagactcagaagcagatttgagtttcttctcactcaaacttagccttttaactttaccgccatcaacttttagtctatccttc |
31653097 |
T |
|
| Q |
115 |
atagtaccttctgattttccaccatggattgtaatcaaatgtctgtattcgcgcgcaccttgctggtttgatttgtaataacttgtactaatatcttcca |
214 |
Q |
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| T |
31653096 |
atagtaccttctgattttccaccatggattgtaatcaaatgtctgtattcgcgcgcaccttgctggtttgatttgtaataacttgtactaatatcttcca |
31652997 |
T |
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| Q |
215 |
tctcttcaccatttactttctgccatagaacagatgattcagatttctttttcttttctgaaaagtgaaatgatggatatatgatttcctattccttacc |
314 |
Q |
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| T |
31652996 |
tctcttcaccatttactttctgccatagaacagatgattcagatttctttttcttttctgaaaagtgaaatgatggatatatgatttcctattccttacc |
31652897 |
T |
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| Q |
315 |
atgtcctcatttttctgtttagccatagaatcttgttgttcctgtccccatgtttcatct |
374 |
Q |
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| T |
31652896 |
atgtcctcatttttctgtatagccatagaatcttgttgttcctgtccccatgtttcatct |
31652837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 31703513 - 31703301
Alignment:
| Q |
28 |
ccatgagactcagaagcagatttgagtttcttctcactcaaacttagccttttaactttaccgccatcaacttttagtctatccttcatagtaccttctg |
127 |
Q |
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|||||||| | |||||||| ||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| ||||||||| |
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| T |
31703513 |
ccatgagatttagaagcagttttgagtttcttctcactcaaacttagccttctgactttaccaccatcaacttttagtatatccttcatgttaccttctg |
31703414 |
T |
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| Q |
128 |
attttccaccatggattgtaatcaaatgtctgtattcgcgcgcaccttgctggtttgatttgtaataacttgtactaatatcttccatctcttcaccatt |
227 |
Q |
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||||||||||||| |||| |||||||||| |||||| | ||| ||||||||||||||||| || | ||||| | ||||||||| | |||||| |||| |
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| T |
31703413 |
attttccaccatgaattgcaatcaaatgtttgtattgaagtgcaacttgctggtttgatttgaaagcatttgtatttatatcttccttgtcttcatcatt |
31703314 |
T |
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| Q |
228 |
tactttctgccat |
240 |
Q |
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||| |||||||| |
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| T |
31703313 |
tacactctgccat |
31703301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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