View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_high_11 (Length: 335)
Name: NF2797_high_11
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_high_11 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 12 - 335
Target Start/End: Original strand, 22042216 - 22042538
Alignment:
| Q |
12 |
aagaacatacagataatatcctcttcaaggaagcaggagctgtaacgggtattttctgcaatctatatgtttcagctgacgaagaaaataagaatatagt |
111 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22042216 |
aagaacatccagataatatcctcttcaaggaagcaggagctgtaacgggtattttctgcaatctatatgttttagctgacgaagaaaataagaatatagt |
22042315 |
T |
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| Q |
112 |
ggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggtttatggatcttaaaggaaaagaagatgagttgcttacaaattt |
211 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042316 |
ggagaatcttatatgggaatactatcgcgatatttactttggacacaggaaagtggtt-atggatcttaaaggaaaagaagatgagttgcttacaaattt |
22042414 |
T |
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| Q |
212 |
tgaataaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatacaaacc |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042415 |
tgaaaaaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatacaaacc |
22042514 |
T |
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| Q |
312 |
gaaatctcattgaagatactagta |
335 |
Q |
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|||||||||||||||||||||||| |
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| T |
22042515 |
gaaatctcattgaagatactagta |
22042538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 2425200 - 2424878
Alignment:
| Q |
12 |
aagaacatacagataatatcctcttcaaggaagcaggagctgtaacgggtattttctgcaatctatatgtttcagctgacgaagaaaataagaatatagt |
111 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
2425200 |
aagaacatctagataatatcctcttcaaggaagcaggagctgtaacaggtgttttctgcaatcaatatgttttagctgacgaagaaaataagaatatagt |
2425101 |
T |
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| Q |
112 |
ggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggtttatggatcttaaaggaaaagaagatgagttgcttacaaattt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||| |||| |
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| T |
2425100 |
ggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtgg-ctacgcatcttaaaggaaaagaagatgtgttgcttacggattt |
2425002 |
T |
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| Q |
212 |
tgaataaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatacaaacc |
311 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2425001 |
cgaaaaaatcgcggaatctgcttttctcatggttgtagtatttgcactagctgtaacaaagcacaaattgagttccaaatttgctcaagaaatacaaacc |
2424902 |
T |
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| Q |
312 |
gaaatctcattgaagatactagta |
335 |
Q |
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||| |||||||||||||||||||| |
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| T |
2424901 |
gaagtctcattgaagatactagta |
2424878 |
T |
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