View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2797_high_2 (Length: 791)

Name: NF2797_high_2
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2797_high_2
NF2797_high_2
[»] chr5 (5 HSPs)
chr5 (1-767)||(41718154-41718921)
chr5 (193-769)||(41722878-41723453)
chr5 (193-533)||(34359934-34360273)
chr5 (193-533)||(29585300-29585640)
chr5 (212-533)||(34352226-34352546)
[»] chr4 (16 HSPs)
chr4 (1-601)||(48701627-48702228)
chr4 (1-531)||(42265883-42266414)
chr4 (1-601)||(30949989-30950607)
chr4 (193-601)||(48697131-48697539)
chr4 (191-531)||(42270602-42270941)
chr4 (199-532)||(24520031-24520363)
chr4 (192-601)||(30945476-30945901)
chr4 (193-484)||(10427315-10427597)
chr4 (206-401)||(48782850-48783031)
chr4 (317-445)||(1979253-1979375)
chr4 (49-140)||(1979687-1979778)
chr4 (246-344)||(17248015-17248112)
chr4 (1-49)||(21514845-21514893)
chr4 (195-272)||(36615361-36615438)
chr4 (204-272)||(30165900-30165968)
chr4 (259-297)||(1979567-1979604)
[»] chr3 (13 HSPs)
chr3 (1-532)||(5823081-5823613)
chr3 (1-601)||(2817069-2817658)
chr3 (193-533)||(5818513-5818852)
chr3 (193-490)||(54545902-54546200)
chr3 (193-346)||(24659136-24659287)
chr3 (201-307)||(4579254-4579360)
chr3 (207-379)||(31204781-31204950)
chr3 (346-484)||(24671173-24671301)
chr3 (231-388)||(35977103-35977258)
chr3 (71-120)||(5382624-5382673)
chr3 (181-237)||(25877086-25877142)
chr3 (66-120)||(13722392-13722446)
chr3 (359-484)||(4579126-4579241)
[»] chr8 (6 HSPs)
chr8 (1-532)||(9443898-9444430)
chr8 (193-532)||(9439372-9439710)
chr8 (71-120)||(87218-87267)
chr8 (73-120)||(19803179-19803226)
chr8 (210-266)||(4799315-4799371)
chr8 (192-265)||(4844870-4844943)
[»] chr6 (11 HSPs)
chr6 (1-601)||(27878515-27879134)
chr6 (193-533)||(26976131-26976470)
chr6 (193-532)||(1234680-1235018)
chr6 (193-531)||(27873990-27874327)
chr6 (1-244)||(30967674-30967920)
chr6 (193-484)||(18967912-18968194)
chr6 (192-468)||(30986552-30986830)
chr6 (239-481)||(30966683-30966923)
chr6 (198-384)||(21966677-21966860)
chr6 (81-361)||(23012386-23012667)
chr6 (71-120)||(16777060-16777109)
[»] chr2 (15 HSPs)
chr2 (202-601)||(5198664-5199062)
chr2 (4-356)||(825632-825987)
chr2 (117-482)||(15602905-15603272)
chr2 (193-356)||(830288-830452)
chr2 (200-460)||(28715816-28716070)
chr2 (202-484)||(30396920-30397191)
chr2 (1-413)||(13843604-13844014)
chr2 (406-490)||(830205-830291)
chr2 (193-353)||(31592910-31593068)
chr2 (406-490)||(825549-825635)
chr2 (193-415)||(13840240-13840456)
chr2 (288-415)||(8004167-8004292)
chr2 (213-328)||(12175768-12175881)
chr2 (208-257)||(9358158-9358207)
chr2 (254-363)||(42117769-42117876)
[»] chr7 (8 HSPs)
chr7 (198-484)||(16183636-16183913)
chr7 (193-490)||(30235038-30235339)
chr7 (1-379)||(8138265-8138645)
chr7 (1-196)||(25441073-25441272)
chr7 (179-415)||(8139950-8140183)
chr7 (206-351)||(5102606-5102749)
chr7 (193-308)||(36528415-36528529)
chr7 (71-120)||(11712072-11712121)
[»] scaffold0074 (1 HSPs)
scaffold0074 (193-484)||(27226-27508)
[»] chr1 (7 HSPs)
chr1 (193-484)||(46191266-46191546)
chr1 (198-379)||(30697120-30697300)
chr1 (193-379)||(4130215-4130401)
chr1 (71-120)||(2796411-2796460)
chr1 (71-120)||(42376095-42376144)
chr1 (71-120)||(14476165-14476214)
chr1 (71-120)||(23201147-23201196)
[»] scaffold0015 (1 HSPs)
scaffold0015 (71-120)||(28822-28871)


Alignment Details
Target: chr5 (Bit Score: 726; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 1 - 767
Target Start/End: Complemental strand, 41718921 - 41718154
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718921 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 41718822  T
Q  101 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccag--gctctgataccactgttag 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  41718821 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttag 41718722  T
Q  199 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718721 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 41718622  T
Q  299 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  41718621 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctct 41718522  T
Q  399 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagct 498  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  41718521 tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagct 41718423  T
Q  499 ttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatt 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718422 ttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatt 41718323  T
Q  599 tattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatg 698  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41718322 tattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatg 41718223  T
Q  699 tattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 767  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718222 tattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 41718154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 193 - 769
Target Start/End: Complemental strand, 41723453 - 41722878
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723453 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 41723354  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  41723353 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact 41723254  T
Q  393 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaa 492  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  41723253 ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaa 41723155  T
Q  493 caagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccatt 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723154 caagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccatt 41723055  T
Q  593 ttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtca 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41723054 ttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtca 41722955  T
Q  693 aacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaat 769  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722954 aacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaat 41722878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 193 - 533
Target Start/End: Complemental strand, 34360273 - 34359934
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34360273 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca 34360174  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34360173 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact 34360074  T
Q  393 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaa 492  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34360073 ctctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaa 34359975  T
Q  493 caagctttacttgttcttgtgttgttactgatttgggatga 533  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34359974 caagctttacttgttcttgtgttgttactgatttgggatga 34359934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 193 - 533
Target Start/End: Original strand, 29585300 - 29585640
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585300 tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 29585399  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  29585400 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccact 29585499  T
Q  393 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaa 492  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  29585500 ctctcttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctaga 29585599  T
Q  493 caagctttacttgttcttgtgttgttactgatttgggatga 533  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29585600 caagctttacttgttgttgtgttgttactgatttgggatga 29585640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 212 - 533
Target Start/End: Complemental strand, 34352546 - 34352226
Alignment:
Q  212 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 34352447  T
Q  312 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34352446 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga 34352347  T
Q  412 atacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttg 511  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34352346 atactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaagctttacttgttcttg 34352248  T
Q  512 tgttgttactgatttgggatga 533  Q
    ||||||||||||||||||||||    
T  34352247 tgttgttactgatttgggatga 34352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 48701627 - 48702228
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701627 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 48701726  T
Q  101 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccag--gctctgataccactgttag 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  48701727 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttag 48701826  T
Q  199 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701827 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 48701926  T
Q  299 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  48701927 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctct 48702026  T
Q  399 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagct 498  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  48702027 tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagct 48702125  T
Q  499 ttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatt 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || ||||    
T  48702126 ttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatt 48702225  T
Q  599 tat 601  Q
    |||    
T  48702226 tat 48702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 42266414 - 42265883
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266414 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 42266315  T
Q  101 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccag--gctctgataccactgttag 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  42266314 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttag 42266215  T
Q  199 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 298  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266214 ataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 42266115  T
Q  299 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266114 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 42266015  T
Q  399 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagct 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||    
T  42266014 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaagct 42265916  T
Q  499 ttacttgttcttgtgttgttactgatttgggat 531  Q
    |||||||||||||||||||||||||||||||||    
T  42265915 ttacttgttcttgtgttgttactgatttgggat 42265883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 30949989 - 30950607
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30949989 tctatctcaaatttcgctgccatggttttacaccaaatatttttcattcaaactagaccggagtaataagaattcttttctgatgtggaagatcagttta 30950088  T
Q  101 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccag--gctctgataccactgttag 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  30950089 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttag 30950188  T
Q  199 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 298  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30950189 gtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa- 30950287  T
Q  299 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  30950288 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctct 30950387  T
Q  399 tataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta-----a 491  Q
    |||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||     |    
T  30950388 tataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaaga 30950487  T
Q  492 acaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatg 581  Q
    ||||         |  |||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || |||||||    
T  30950488 acaagtagttgttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatg 30950587  T
Q  582 cctcaaccattttcatttat 601  Q
    || |||||| || |||||||    
T  30950588 ccccaaccaattgcatttat 30950607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 193 - 601
Target Start/End: Original strand, 48697131 - 48697539
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 48697230  T
Q  293 aataaggggaaaa-aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac 391  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  48697231 aataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac 48697330  T
Q  392 tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaa 491  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  48697331 tctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaa 48697429  T
Q  492 acaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccat 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |  | || ||||||||| ||||||     
T  48697430 acaagctttacttgttcttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaa 48697529  T
Q  592 tttcatttat 601  Q
    || |||||||    
T  48697530 ttgcatttat 48697539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 191 - 531
Target Start/End: Complemental strand, 42270941 - 42270602
Alignment:
Q  191 actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 290  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270941 actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 42270842  T
Q  291 caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270841 caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca 42270742  T
Q  391 ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||    
T  42270741 ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tcta 42270643  T
Q  491 aacaagctttacttgttcttgtgttgttactgatttgggat 531  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42270642 aacaagctttacttgttcttgtgttgttactgatttgggat 42270602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 199 - 532
Target Start/End: Original strand, 24520031 - 24520363
Alignment:
Q  199 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 298  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 24520130  T
Q  299 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24520131 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct 24520230  T
Q  399 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagct 498  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  24520231 tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagct 24520329  T
Q  499 ttacttgttcttgtgttgttactgatttgggatg 532  Q
    ||||||||||||||||||||||||||||||||||    
T  24520330 ttacttgttcttgtgttgttactgatttgggatg 24520363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 192 - 601
Target Start/End: Original strand, 30945476 - 30945901
Alignment:
Q  192 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 291  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945476 ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 30945575  T
Q  292 aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac 391  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30945576 aaataaggg-aaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccac 30945674  T
Q  392 tctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactct 489  Q
    ||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||    
T  30945675 tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattct 30945774  T
Q  490 a-----aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaa 574  Q
    |     |||||         |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | ||     
T  30945775 actaagaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaag 30945874  T
Q  575 agccatgcctcaaccattttcatttat 601  Q
    ||||||||| |||||| || |||||||    
T  30945875 agccatgccccaaccaattgcatttat 30945901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 193 - 484
Target Start/End: Complemental strand, 10427597 - 10427315
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10427597 tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca 10427498  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac 391  Q
    |||||||||||||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||||| |    
T  10427497 aataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-c 10427399  T
Q  392 tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 484  Q
    ||||||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  10427398 tctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 10427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 206 - 401
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
Q  206 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 305  Q
    |||| ||||||||||||||||   |||||||||| ||||||||| |||||||||||||||||||||| |||||||||   |||||||||||| |||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatattt-acgtggaaatttctcaacaaataaagggaaaa 48782933  T
Q  306 aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 401  Q
    |  || ||||         ||||||||||||||||||||||||||| | |||||||||||||||||| |  |||||||||||||||||||||||||    
T  48782932 a--catgggg---------agaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 317 - 445
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
Q  317 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 416  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  |||| ||||||| ||| | |||||||||||||||||||| ||||||||       
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- 1979281  T
Q  417 aactaacacaaactaggagaaacctcaca 445  Q
     |||| ||| ||| |||||||||||||||    
T  1979280 -actagcactaaccaggagaaacctcaca 1979253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 1979778 - 1979687
Alignment:
Q  49 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccact 140  Q
    |||||||||| |||||||| ||||||| ||| |||||||||| || ||| ||||| ||||||| | | || |||||||||||||||||||||    
T  1979778 caaactagactggaataattagaattcgtttatgatgtggaatattagtctaaactgcaaccatataacaaactaagatttttcttaccact 1979687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 246 - 344
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
Q  246 aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa 344  Q
    ||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| ||  ||||||| |||||||||| |||||||||    
T  17248112 aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa 17248015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21514845 - 21514893
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  21514845 tctatctcaaatttcgttgccatggttttgcaccaaatatttttttttc 21514893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
Q  195 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 272  Q
    |||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  204 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 272  Q
    |||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  259 aacacacaatattttacgtggaaacccctcaacaaataa 297  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 5823081 - 5823613
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823081 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 5823180  T
Q  101 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccag--gctctgataccactgttag 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  5823181 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttag 5823280  T
Q  199 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823281 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 5823380  T
Q  299 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5823381 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct 5823480  T
Q  399 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagct 498  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  5823481 tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagct 5823579  T
Q  499 ttacttgttcttgtgttgttactgatttgggatg 532  Q
    ||||||||||||||||||||||||||||||||||    
T  5823580 ttacttgttcttgtgttgttactgatttgggatg 5823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 2817069 - 2817658
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817069 tctatctcaaatttcgctgccatggttttacaccaaatatttttcattcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 2817168  T
Q  101 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaacca--ggctctgataccactgttag 198  Q
    |||| |||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||  |||| |||||||||||||||    
T  2817169 aaccacaaccacatagcatactaagatttttcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttag 2817268  T
Q  199 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 298  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2817269 gtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa- 2817367  T
Q  299 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca--ctctct 396  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||  ||||||    
T  2817368 gggaaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctct 2817467  T
Q  397 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 496  Q
    ||||||||||||||||||| |||||| |||||||              ||||||||||| |||| ||||||||||||||||||||| ||| |||||||||    
T  2817468 cttataaataggagaatactaactaatacaaact--------------aggagaaactatttttcctctctatattttttctctcattaccctaaacaag 2817553  T
Q  497 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 596  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |  | || ||||||||| |||||| || ||    
T  2817554 ttttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaaccaattgca 2817653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 193 - 533
Target Start/End: Original strand, 5818513 - 5818852
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5818513 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact 5818612  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5818613 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact 5818712  T
Q  393 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaa 492  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  5818713 ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaa 5818811  T
Q  493 caagctttacttgttcttgtgttgttactgatttgggatga 533  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5818812 caagctttacttgttcttgtgttgttactgatttgggatga 5818852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 193 - 490
Target Start/End: Complemental strand, 54546200 - 54545902
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  54546200 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca 54546102  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 392  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54546101 aataaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccact 54546002  T
Q  393 ctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 490  Q
    |||||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  54546001 ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 54545902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 193 - 346
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24659136 tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca 24659235  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 346  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24659236 aataaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
Q  201 accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 4579261  T
Q  301 gaaaaaa 307  Q
    |||||||    
T  4579260 gaaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 207 - 379
Target Start/End: Original strand, 31204781 - 31204950
Alignment:
Q  207 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 306  Q
    |||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa 31204878  T
Q  307 accacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 379  Q
    | ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||  ||||||||||| ||||||||    
T  31204879 atcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 346 - 484
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
Q  346 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca 445  Q
    |||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca 24671262  T
Q  446 ggagaaactaatttttctctctatattttttctctcact 484  Q
    ||||||||||  ||| |||||||||||||| ||||||||    
T  24671263 ggagaaactatatttcctctctatatttttcctctcact 24671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 231 - 388
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
Q  231 aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac 329  Q
    ||||||||||  |||||||||| || |||||| ||||||||| ||||  ||| || |||||| |||  ||||||||  |||  |||||||||| | ||      
T  35977258 aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt 35977162  T
Q  330 tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 388  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 5382624 - 5382673
Alignment:
Q  71 aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  5382624 aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata 5382673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
Q  181 ctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataa 237  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||    
T  25877142 ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 13722392 - 13722446
Alignment:
Q  66 ataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||| |||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  13722392 ataataattcttttctgatgtggaagatcagattaaactacaaccacagagcata 13722446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 484
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
Q  359 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt 458  Q
    |||||||||||||||||||||   ||||||| ||||||| |  |||||||||||||| ||||        ||| |||||||||||||||||||||||  |    
T  4579241 tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat 4579152  T
Q  459 tttctctctatattttttctctcact 484  Q
    || |||||||||||||| ||||||||    
T  4579151 ttcctctctatatttttcctctcact 4579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 9443898 - 9444430
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443898 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 9443997  T
Q  101 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccag--gctctgataccactgttag 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9443998 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttag 9444097  T
Q  199 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444098 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 9444197  T
Q  299 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  9444198 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctct 9444297  T
Q  399 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagct 498  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  9444298 tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagct 9444396  T
Q  499 ttacttgttcttgtgttgttactgatttgggatg 532  Q
    ||||||||||||||||||||||||||||||||||    
T  9444397 ttacttgttcttgtgttgttactgatttgggatg 9444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 193 - 532
Target Start/End: Original strand, 9439372 - 9439710
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439372 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 9439471  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  9439472 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact 9439571  T
Q  393 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaa 492  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  9439572 ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaa 9439670  T
Q  493 caagctttacttgttcttgtgttgttactgatttgggatg 532  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9439671 caagctttacttgttcttgtgttgttactgatttgggatg 9439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 87267 - 87218
Alignment:
Q  71 aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  87267 aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata 87218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 19803226 - 19803179
Alignment:
Q  73 ttcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||    
T  19803226 ttcttttctgatgtggaagatcagattaaactgcaaccacagagcata 19803179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  210 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 266  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 4844943 - 4844870
Alignment:
Q  192 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacac 265  Q
    ||||||||||| |||| ||||||| |||||||||| |  ||||||||||  |||| |||| ||| |||||||||    
T  4844943 ctgttaggtacaagagaaacaaaacattatcacgctgtaaaaataagagttgagataagaagaattgaacacac 4844870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 466; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 27878515 - 27879134
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878515 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 27878614  T
Q  101 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagg--ctctgataccactgttag 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  27878615 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttag 27878714  T
Q  199 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878715 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 27878814  T
Q  299 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878815 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 27878914  T
Q  399 tataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta-----a 491  Q
    |||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||     |    
T  27878915 tataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaaga 27879014  T
Q  492 acaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatg 581  Q
    ||||         |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || |||||||    
T  27879015 acaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatg 27879114  T
Q  582 cctcaaccattttcatttat 601  Q
    || |||||| || |||||||    
T  27879115 ccccaaccaattgcatttat 27879134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 193 - 533
Target Start/End: Original strand, 26976131 - 26976470
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 26976230  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 392  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26976231 aataaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact 26976330  T
Q  393 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaa 492  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  26976331 ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaa 26976429  T
Q  493 caagctttacttgttcttgtgttgttactgatttgggatga 533  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26976430 caagctttacttgttcttgtgttgttactgatttgggatga 26976470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 193 - 532
Target Start/End: Complemental strand, 1235018 - 1234680
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235018 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 1234919  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  1234918 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact 1234819  T
Q  393 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaa 492  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  1234818 ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaa 1234720  T
Q  493 caagctttacttgttcttgtgttgttactgatttgggatg 532  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1234719 caagctttacttgttcttgtgttgttactgatttgggatg 1234680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 193 - 531
Target Start/End: Original strand, 27873990 - 27874327
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27873990 tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 27874089  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 392  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874090 aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 27874189  T
Q  393 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaa 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||    
T  27874190 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaa 27874288  T
Q  493 caagctttacttgttcttgtgttgttactgatttgggat 531  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27874289 caagctttacttgttcttgtgttgttactgatttgggat 27874327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 30967920 - 30967674
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttt- 99  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||| |||||||||||||||||||     
T  30967920 tctatctcgaatttcgctgccatggttttacaccaaatatttttcattcaaactagaccagagtaataagaattcttttatgatgtggaagatcagttta 30967821  T
Q  100 aaaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaac--caggctctgataccactgtta 197  Q
    ||||  |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||    
T  30967820 aaactccaaccacagagcatactaagatttttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgtta 30967721  T
Q  198 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacga 244  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  30967720 ggtaccagagtaacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 193 - 484
Target Start/End: Complemental strand, 18968194 - 18967912
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  18968194 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca 18968095  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac 391  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||| | |    
T  18968094 aataaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-c 18967996  T
Q  392 tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 484  Q
    |||||| |  |||||||||||||| |||        |||||||||||||||||| |||||||||  ||| |||| ||||||||| ||||||||    
T  18967995 tctctcat-gaaataggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact 18967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 192 - 468
Target Start/End: Complemental strand, 30986830 - 30986552
Alignment:
Q  192 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctc 288  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||   ||||||    
T  30986830 ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctc 30986732  T
Q  289 aacaaataaggggaaaaaa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatt 386  Q
    |||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  30986731 aacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaatt 30986632  T
Q  387 accactctctcttataaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta 468  Q
    ||||||||||||| ||||||| |||||    ||| |||| | |||||||||||||||  ||||||||||| || ||||||||||    
T  30986631 accactctctcttgtaaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta 30986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 239 - 481
Target Start/End: Complemental strand, 30966923 - 30966683
Alignment:
Q  239 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta 337  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta 30966825  T
Q  338 agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaa 437  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    ||| |  | | |||||||||    
T  30966824 agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaa 30966729  T
Q  438 acctcac-aggagaaactaatt-tttctctctatattttttctctc 481  Q
    ||||||| || |||||||| || |||||||||||||||||||||||    
T  30966728 acctcacaagtagaaactatttctttctctctatattttttctctc 30966683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 198 - 384
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
Q  198 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 297  Q
    ||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| ||||||    
T  21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa 21966763  T
Q  298 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 384  Q
     |||||||| | | ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966762 agggaaaaatc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 81 - 361
Target Start/End: Original strand, 23012386 - 23012667
Alignment:
Q  81 tgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaacca-- 178  Q
    ||||||||||||||||  ||||| | ||||||| ||||||||||| |||||||||||||| |||| |||| |    | |||| |||| |||||| |||      
T  23012386 tgatgtggaagatcaggctaaactgtaaccacaaagcatactaagttttttcttaccactgcacttgtttgttgatgtggaacaacaactacgagccaat 23012485  T
Q  179 ggctctgataccactgttaggtaccagagtaacaaaa-tattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacg 276  Q
    |||||  ||  || |||| |||| || ||||| |||| |||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||    
T  23012486 ggctcaaatgacattgttgggtaacaaagtaaaaaaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacg 23012584  T
Q  277 tggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 361  Q
    ||||||| | || |||||| | ||| ||||||||  |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012585 tggaaactcgtc-acaaattaaggggaaaaacca-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 16777060 - 16777109
Alignment:
Q  71 aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  16777060 aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata 16777109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 202 - 601
Target Start/End: Original strand, 5198664 - 5199062
Alignment:
Q  202 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 5198763  T
Q  302 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  5198764 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttat 5198863  T
Q  402 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta 501  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  5198864 aaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagcttta 5198962  T
Q  502 cttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  5198963 cttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 5199062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 4 - 356
Target Start/End: Complemental strand, 825987 - 825632
Alignment:
Q  4 atctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaac 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  825987 atctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaacaataagaattcttttctgatgtggaagatcagtttaaac 825888  T
Q  104 cgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaacca--ggctctgataccactgttaggta 201  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  825887 cgcaaccacagagcatactaagatttttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggta 825788  T
Q  202 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  825787 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataagggg 825688  T
Q  302 -aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 356  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825687 aaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 117 - 482
Target Start/End: Complemental strand, 15603272 - 15602905
Alignment:
Q  117 catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaacca--ggctctgataccactgttaggtaccagagtaacaaa 214  Q
    ||||||||||| |||||||||||||||| ||||| |  || ||||||||||  |||||||||  | |||||||| ||||||| |||   ||||||| |||    
T  15603272 catactaagatatttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaaa 15603173  T
Q  215 atattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggg 314  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603172 atattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggg 15603073  T
Q  315 gcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaata 414  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |||| ||||||||||||||    
T  15603072 gcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaata 15602973  T
Q  415 caaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctca 482  Q
    | |||||||||  |||| ||||||||||| || | || ||||||||||| ||||||||||| ||||||    
T  15602972 ctaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca 15602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 193 - 356
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830452 tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 830353  T
Q  293 aataaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 356  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830352 aataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 200 - 460
Target Start/End: Complemental strand, 28716070 - 28715816
Alignment:
Q  200 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 299  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg 28715972  T
Q  300 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctt 399  Q
    ||||||| ||||  |  |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  | || |    
T  28715971 ggaaaaa-ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcct 28715873  T
Q  400 ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttt 460  Q
    ||||||||||||||    |||||||| | ||||||||||||| ||| ||||||||| ||||    
T  28715872 ataaataggagaat----actaacactacctaggagaaaccttacaagagaaactattttt 28715816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 202 - 484
Target Start/End: Original strand, 30396920 - 30397191
Alignment:
Q  202 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 301  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||     
T  30396920 ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataaggga 30397017  T
Q  302 aaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctta 400  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||   ||||||| |||| | ||     
T  30397018 aaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctatgtt- 30397115  T
Q  401 taaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 484  Q
     |||||||||||||  |||        ||||||||||| ||||||||||||||||  ||| ||||||||||| || ||||||||    
T  30397116 gaaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact 30397191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 13843604 - 13844014
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttta 100  Q
    |||||||||||||||| || |||||||||||||||| | ||||||||| || || | ||  ||||||||||||| |||| |||||||||| |||| | ||    
T  13843604 tctatctcaaatttcgatgtcatggttttacaccaactttttttcttt-aagctggtcctaaataataagaatttttttttgatgtggaaaatcaatcta 13843702  T
Q  101 aaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaacca--ggctctgataccactgttag 198  Q
     |  ||||||||| | |||||||| ||||||||||||||||||| |||||   ||||||||| |||    |||| |||  |||||| ||||||||  | |    
T  13843703 tattgcaaccacataacatactaatatttttcttaccactccaccagtttgctacagcggaacaactatcacgagccaatggctctaataccacttgtgg 13843802  T
Q  199 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagag-gaactgaacacacaatattttacgtggaaacccctcaacaaataa 297  Q
     || |||||||| |||||||||||||| |  |||| ||||    ||||||| ||  || |||  |||||||| |||||||||||||||||||||||||||    
T  13843803 ctatcagagtaataaaatattatcacgtaagtaaagtaagttttgagaaaaaagaaaaatga--acacaata-tttacgtggaaacccctcaacaaataa 13843899  T
Q  298 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctc 397  Q
    || | |||||  |  ||  || |||| |||| ||||| ||||||||||||||||||||||| || | |||||||||| ||| || |||||||||||| |     
T  13843900 ggag-aaaaattataggttaaaagtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctatt 13843998  T
Q  398 ttataaataggagaat 413  Q
    ||| ||||||||||||    
T  13843999 ttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 406 - 490
Target Start/End: Complemental strand, 830291 - 830205
Alignment:
Q  406 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 490  Q
    ||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 830205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 193 - 353
Target Start/End: Original strand, 31592910 - 31593068
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    |||| |||| || ||||||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |    
T  31592910 tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata 31593009  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 353  Q
    ||||| |  ||||||||||  |  ||||||||||||||||||||||  | |||||||||||    
T  31593010 aataa-gaaaaaaaaccac-agataagagtagagaactttcactaaccgaaagaaattaca 31593068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 406 - 490
Target Start/End: Complemental strand, 825635 - 825549
Alignment:
Q  406 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 490  Q
    ||||||||||||||  |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattcta 825549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 193 - 415
Target Start/End: Original strand, 13840240 - 13840456
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    |||| ||||||||| |||||||||||||||||| |  || ||||| ||| |||||| ||||||| |||||||  |||||| || ||  ||  ||||||||    
T  13840240 tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaaca 13840336  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 392  Q
    || |||||| ||||  || || ||||||||||| || ||| || ||||  || ||||||||  ||||||||||||||| ||||||||||||||||| | |    
T  13840337 aacaagggggaaaa--catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaatt 13840433  T
Q  393 ctctcttataaataggagaatac 415  Q
    |||||||| |||||  |||||||    
T  13840434 ctctcttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 415
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
Q  288 caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 387  Q
    ||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| |  |||||||| |||||  ||| ||||||||||||    
T  8004292 caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta 8004194  T
Q  388 ccactctctcttataaataggagaatac 415  Q
     |||||||||||||||||||||||||||    
T  8004193 -cactctctcttataaataggagaatac 8004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
Q  213 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg 312  Q
    ||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||||  ||||||||  ||||| ||||||  ||||||||| |      
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt 12175865  T
Q  313 gggcaagagtagagaa 328  Q
    || |||||||||||||    
T  12175866 ggacaagagtagagaa 12175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
Q  208 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact 257  Q
    |||| ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358158 taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 363
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
Q  254 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 353  Q
    ||||||||| ||||||||| |||| |||||| |||||  |||||||||| ||||||||| | ||| |||||| |||||||| |||  |  |||||||| |    
T  42117876 aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttcattaaacgagagaaattata 42117779  T
Q  354 ggacctctct 363  Q
     |||||||||    
T  42117778 agacctctct 42117769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-105; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 198 - 484
Target Start/End: Original strand, 16183636 - 16183913
Alignment:
Q  198 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 16183735  T
Q  298 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctct 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||   ||||||| ||||||    
T  16183736 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctct 16183834  T
Q  397 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 484  Q
    |||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  16183835 ctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 16183913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 193 - 490
Target Start/End: Complemental strand, 30235339 - 30235038
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    |||| |||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||     
T  30235339 tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacg 30235241  T
Q  293 aataagggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct-ctaaatacaaggagagtacaattacca 390  Q
    ||||||||| |||||||||||||  ||||||||| |||||||| ||| | |||||||||||||||||||||| |||  || |||||||||||||||||||    
T  30235240 aataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattacca 30235141  T
Q  391 ctctctcttataaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctctatattttttctctcactact 487  Q
    |||||||||||||||||||||||||||  |||||||| |  || |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  30235140 ctctctcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactact 30235041  T
Q  488 cta 490  Q
    |||    
T  30235040 cta 30235038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 8138265 - 8138645
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttt-----tctttcaaactagaccggaataataagaattcttttctgatgtggaagatca 95  Q
    ||||||| |||||||||||||||||||||||||||| ||||||     ||| |||||||| | |  |||| ||||||||||||| ||||||||||| |||    
T  8138265 tctatctaaaatttcgctgccatggttttacaccaattattttatttttctctcaaactatatcaaaatagtaagaattcttttatgatgtggaagttca 8138364  T
Q  96 gtttaaaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaacca--ggctctgataccact 193  Q
    || |||||| |||||| | ||||||||||||||||||||||||||| || ||||     | || |||||||  | ||||||||  |||||| ||||||||    
T  8138365 gtctaaaccacaaccaaatagcatactaagatttttcttaccactcgaccagttg----cggcagaataacgacaacgaaccaatggctctaataccact 8138460  T
Q  194 gttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaa 293  Q
    ||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| || || | |||||||||||| |||||    
T  8138461 gttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaacaa 8138559  T
Q  294 ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 379  Q
    | ||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  8138560 acaaggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 25441272 - 25441073
Alignment:
Q  1 tctatctcaaatttcgctgccatggttttacaccaaatatttttctt--tcaaactagaccggaataataagaattcttttctgatgtggaagatcagtt 98  Q
    ||||||||||||||||||||||||||||| |||||||||| ||| ||  ||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  25441272 tctatctcaaatttcgctgccatggtttttcaccaaatatgttttttcttcaaactagacaggaataataagaattcttttatgatgtgaaagatcagtt 25441173  T
Q  99 taaaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaacca--ggctctgataccactgtt 196  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||  ||||||||||||||||||    
T  25441172 tacaccgcaaccacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccactgtt 25441073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 179 - 415
Target Start/End: Original strand, 8139950 - 8140183
Alignment:
Q  179 ggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtg 278  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||| |||| |||    
T  8139950 ggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaata-tttatgtg 8140048  T
Q  279 gaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggaga 378  Q
    |||||||||||||||||||||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| ||||||||||||    
T  8140049 gaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggaga 8140148  T
Q  379 gtacaattaccactctctcttataaataggagaatac 415  Q
    |   ||||||| |||||||||  ||||||||||||||    
T  8140149 gacaaattacc-ctctctctt-gaaataggagaatac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 206 - 351
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
Q  206 agtaacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa 304  Q
    ||||||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| ||||||||||||||||||    
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaa 5102703  T
Q  305 aaaccacggggcaagagtagagaactttcactaagtggaagaaatta 351  Q
    || ||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102704 aa-ccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 36528415 - 36528529
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    |||| |||| |||||||||||| ||  || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||     
T  36528415 tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg 36528513  T
Q  293 aataaggggaaaaaac 308  Q
    |||||||  |||||||    
T  36528514 aataaggaaaaaaaac 36528529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 11712121 - 11712072
Alignment:
Q  71 aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||||    
T  11712121 aattattttctgatgtggaagatcagattaaactgcaaccacagagcata 11712072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 180; Significance: 9e-97; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 193 - 484
Target Start/End: Original strand, 27226 - 27508
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  27226 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca 27325  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||   ||||||||     
T  27326 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca- 27424  T
Q  392 tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 484  Q
    ||||||||  ||||||| |||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  27425 tctctctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 3e-90; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 193 - 484
Target Start/End: Complemental strand, 46191546 - 46191266
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  46191546 tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaaca 46191449  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac 391  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||   ||||||| |    
T  46191448 aataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-c 46191350  T
Q  392 tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 484  Q
    ||||||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  46191349 tctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 46191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 198 - 379
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
Q  198 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 297  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataa 30697218  T
Q  298 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 379  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30697219 ggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 193 - 379
Target Start/End: Complemental strand, 4130401 - 4130215
Alignment:
Q  193 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 292  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  4130401 tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaaca 4130303  T
Q  293 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 379  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  4130302 aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 2796411 - 2796460
Alignment:
Q  71 aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  2796411 aattcttttctgatgtggaagatcacattaaactgcaaccacagagcata 2796460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 42376144 - 42376095
Alignment:
Q  71 aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  42376144 aattcttttctgatgtggaagatcagattaaactgcaaccacaaagcata 42376095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 14476165 - 14476214
Alignment:
Q  71 aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||||||||||||||||||||||| | |||||| ||||||| ||||||||    
T  14476165 aattcttttctgatgtggaagatccgattaaactgcaaccatagagcata 14476214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 23201196 - 23201147
Alignment:
Q  71 aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||||||||||||||||||||||||  |||||| ||||||||| ||||||    
T  23201196 aattcttttctgatgtggaagatcatattaaactgcaaccacatagcata 23201147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 28822 - 28871
Alignment:
Q  71 aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata 120  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  28822 aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata 28871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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