View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2797_high_4 (Length: 457)
Name: NF2797_high_4
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 443
Target Start/End: Complemental strand, 13140219 - 13139773
Alignment:
| Q |
13 |
aaaattggttgtacaaatatcaatcctctttatnnnnnnngcttatgacacatccataagctgttttgaatctatttccacaggctcttcaatatagctt |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13140219 |
aaaattggttgtacaaatatcactcctctttatgaaaacagcttatgacacatccataagctgttttgaatctatttccacaggctcttcaatatagctt |
13140120 |
T |
|
| Q |
113 |
ataa-------------cttatgtcaaaactcaaaacagtttaacnnnnnnn---gaatattttgttatggaaatagcttatgcataaacacttaactaa |
196 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13140119 |
ataaaaacagcttataacttatgtcaaaactcaaaacagtttaacttttttttttgaatatttttttatggaaatagcttatgcattaacacttaactaa |
13140020 |
T |
|
| Q |
197 |
gctattcatccaaacattgccataaaacaaagtacctgagttgcaagctggtgtatcacattctcagcattaccaaacttaatcatgagattagaaccac |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13140019 |
gctattcatccaaacattgccataaaacaaagtacctgagttgcaagctggtgtatcacattctcagcattaccaaacttaatcatgagattagaaccac |
13139920 |
T |
|
| Q |
297 |
gacctttcaacgacttcctcaaatctcgaacagcaaacacaacgagttccatcatttcatcggaaaaccctgcggagcaagcaaaacagcatcaatagag |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13139919 |
gacctttcaacgacttcctcaaatctcgaacagcgaacacaacgagttccagcatttcatcggaaaaccctgcggagcaagcaaaacagcatcaatagag |
13139820 |
T |
|
| Q |
397 |
tcagtttctaacatttcaattcgatgagtgattatgaagtttgaatt |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13139819 |
tcagtttctaacatttcaattcgatgagtgatgatgaagtttgaatt |
13139773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 21952541 - 21952507
Alignment:
| Q |
157 |
ttttgttatggaaatagcttatgcataaacactta |
191 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21952541 |
ttttgttatagaaatagcttatgcataaacactta |
21952507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 42641737 - 42641771
Alignment:
| Q |
157 |
ttttgttatggaaatagcttatgcataaacactta |
191 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
42641737 |
ttttgttatggaaatagcttatacataaacactta |
42641771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 51044563 - 51044600
Alignment:
| Q |
157 |
ttttgttatggaaatagcttatgcataaacacttaact |
194 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
51044563 |
ttttgttatagaaatagcttatacataaacacttaact |
51044600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 46223176 - 46223210
Alignment:
| Q |
157 |
ttttgttatggaaatagcttatgcataaacactta |
191 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
46223176 |
ttttgttatggaaatagcttatacataaacactta |
46223210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 13508498 - 13508437
Alignment:
| Q |
157 |
ttttgttatggaaatagcttatgcataaacacttaactaagctattcatccaaacattgcca |
218 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| |||| | || |||||||||| |||| |
|
|
| T |
13508498 |
ttttgttatagaaatagcttaaacataaacacttaattaagttgtttatccaaacatggcca |
13508437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 21782673 - 21782734
Alignment:
| Q |
157 |
ttttgttatggaaatagcttatgcataaacacttaactaagctattcatccaaacattgcca |
218 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| |||| | || |||||||||| |||| |
|
|
| T |
21782673 |
ttttgttatagaaatagcttaaacataaacacttaattaagttgtttatccaaacatggcca |
21782734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University