View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2797_low_1 (Length: 1107)

Name: NF2797_low_1
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2797_low_1
NF2797_low_1
[»] chr5 (12 HSPs)
chr5 (18-1100)||(11640097-11641179)
chr5 (567-1100)||(11622153-11622688)
chr5 (708-971)||(11604902-11605165)
chr5 (18-438)||(11621606-11622033)
chr5 (36-204)||(11605768-11605946)
chr5 (618-701)||(12686617-12686700)
chr5 (618-701)||(12692719-12692802)
chr5 (139-204)||(14484602-14484668)
chr5 (618-701)||(32094660-32094743)
chr5 (623-701)||(19060217-19060295)
chr5 (640-701)||(20499776-20499837)
chr5 (623-681)||(22647931-22647989)
[»] chr8 (9 HSPs)
chr8 (618-701)||(9934921-9935004)
chr8 (618-701)||(32896650-32896733)
chr8 (614-701)||(5542596-5542683)
chr8 (618-701)||(32890526-32890609)
chr8 (618-701)||(36818610-36818693)
chr8 (618-701)||(42993438-42993521)
chr8 (603-701)||(10705476-10705573)
chr8 (603-701)||(42033435-42033532)
chr8 (603-701)||(10699667-10699764)
[»] chr2 (9 HSPs)
chr2 (139-204)||(33735417-33735483)
chr2 (618-701)||(13455737-13455820)
chr2 (618-701)||(13461678-13461761)
chr2 (618-701)||(35085118-35085201)
chr2 (618-701)||(35091091-35091174)
chr2 (618-701)||(36750052-36750135)
chr2 (603-701)||(7771611-7771708)
chr2 (631-701)||(23283881-23283951)
chr2 (623-701)||(23343201-23343279)
[»] scaffold0208 (2 HSPs)
scaffold0208 (618-701)||(12033-12116)
scaffold0208 (618-670)||(6191-6243)
[»] chr7 (2 HSPs)
chr7 (618-701)||(28421397-28421480)
chr7 (618-670)||(5979614-5979666)
[»] chr6 (5 HSPs)
chr6 (618-701)||(4580760-4580843)
chr6 (614-701)||(21191305-21191392)
chr6 (626-701)||(25353851-25353926)
chr6 (623-701)||(12801982-12802060)
chr6 (603-701)||(21770989-21771086)
[»] chr3 (10 HSPs)
chr3 (618-701)||(11840164-11840247)
chr3 (618-701)||(26429856-26429939)
chr3 (618-701)||(42191659-42191742)
chr3 (618-701)||(42197601-42197684)
chr3 (603-671)||(46656348-46656415)
chr3 (618-701)||(10238651-10238734)
chr3 (618-701)||(10244773-10244856)
chr3 (618-701)||(17056230-17056313)
chr3 (618-701)||(17601972-17602055)
chr3 (242-299)||(49510305-49510362)
[»] chr1 (9 HSPs)
chr1 (618-701)||(25275485-25275568)
chr1 (618-701)||(25381974-25382057)
chr1 (618-701)||(50305835-50305918)
chr1 (603-701)||(27954799-27954896)
chr1 (618-701)||(1077882-1077965)
chr1 (643-701)||(24927232-24927290)
chr1 (623-701)||(24964148-24964226)
chr1 (618-670)||(25387941-25387993)
chr1 (603-701)||(44409638-44409735)
[»] chr4 (7 HSPs)
chr4 (603-701)||(6257629-6257726)
chr4 (618-701)||(24287625-24287708)
chr4 (603-701)||(26971979-26972076)
chr4 (626-701)||(49976239-49976314)
chr4 (623-701)||(4632013-4632091)
chr4 (603-701)||(50168233-50168330)
chr4 (197-238)||(53807338-53807378)


Alignment Details
Target: chr5 (Bit Score: 1043; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 1043; E-Value: 0
Query Start/End: Original strand, 18 - 1100
Target Start/End: Original strand, 11640097 - 11641179
Alignment:
Q  18 aagattgtttttggaattaagaccatgaaagctagacgcaaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11640097 aagattgtttttggaattaagaccatgaaagctagacgcaaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtc 11640196  T
Q  118 caatcataccttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaatttggaattaattttgttaataattaattatatacaatacat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11640197 caatcataccttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaatttggaattaattttgttaataattaattatatacaatacat 11640296  T
Q  218 gctcaatgcacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatctacggcatgctga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  11640297 gctcaatgcacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatctacggcgtgttga 11640396  T
Q  318 tttatcaaagatattttaaaaatacctgatttcattgataatagtctctcgacagtactcctaaaattcagagagtcgctgataatgaacacctaccggt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11640397 tttatcaaagatattttaaaaatacctgatttcattgataatagtctctcaacagtactcctaaaattcagagagtcgctgataatgaacacctaccggt 11640496  T
Q  418 tagtgcttctccctcaactggaacttatatgcttttcagatggggataagaggcaaggaaggtgcattatttccagtatattggatatcatagcctatat 517  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11640497 tagtgcttctccctcaactggaacttatatgctcttcagatggggataagaggcaaggaaggtgcattatttccattatattggatatcatagcctatat 11640596  T
Q  518 attaagtgatggccaattgtgtttctgttattccaagacatcacattagtaatattcactcatatttgaatccatataaactagttatttgattcattat 617  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11640597 attaagtgatggccaattgtggttctgttattccaagacatcacattagtaatattcactcatatttgaatccatataaactagttatttaattcattat 11640696  T
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataattttaaataaatattcca 717  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11640697 taaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataattttaaataaatattcca 11640796  T
Q  718 acaggtgatgcccttttgctggaggaagctgatttagttggaattgaacaaccaaagaagcagctctgtgatttgcttttcaaagatgaatcaaataggg 817  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11640797 acaggtgatgcccttttgctggaggaagctgatttagttggaattgaacatccaaagaagcagctctgtgatttgcttttcaaagatgaatcaaataggg 11640896  T
Q  818 cagtgatttccatttatggtatgggaggtttagggaagacaacaatagcaaaacaagtctatgatgatccaaaagtcaagaagcgttttaggattcatgc 917  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11640897 ctgtgatttccatttatggtatgggaggtttagggaagacaacaatagcaaaacaagtctatgatgatccaaaagtcaagaagcgttttaggattcatgc 11640996  T
Q  918 ttgggttaatctctctcaatctttcaaaatggaagagttgcttaaagaccttgttgaacagattcatattctcatcggaaaaccagttccagaagcagtt 1017  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11640997 ttgggttaatctctctcaatctttcaaaatggaagagttgcttaaagaccttgttgaacagattcatattctcatcggaaaaccagttccagaagcagtt 11641096  T
Q  1018 gaaaggatgaaaagtgacaagctgaaagagttgattaaggatttgcttcagagaagcaggtacctaattgtgcttgatgatgt 1100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11641097 gaaaggatgaaaagtgacaagctgaaagagttgattaaggatttgcttcagagaagcaggtacctaattgtgcttgatgatgt 11641179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 567 - 1100
Target Start/End: Original strand, 11622153 - 11622688
Alignment:
Q  567 taatattcactcatatttgaatccatataaactagttatttga-ttcattatcaaattagaaatataattagctttattacataatttgataactaatca 665  Q
    ||||||||||||||| || | ||||||||||  | |||||| | || | |||||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  11622153 taatattcactcatactttagtccatataaaaaaattattttaatttagtatcaaattagaaatataattaactttattacatagtttgataattaatca 11622252  T
Q  666 attaaaactc-ctaattgttaaatagctattataattttaaataaatattccaacaggtgatgcccttttgctggaggaagctgatttagttggaattga 764  Q
    |||||||||  || |||| |||||||||| |||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11622253 attaaaactttctgattgataaatagctaatatatttttaaatatatactccaacaggtgatgcccttttgctagaggaagctgatttagttggaattga 11622352  T
Q  765 acaaccaaagaagcagctctgtgatttgcttttcaaagatgaatcaaatagggcagtgatttccatttatggtatgggaggtttagggaagacaacaata 864  Q
     |||||||||||||||||   ||||||||||||||||||||||||||| || | ||||||||| || |||||||||||||||||||||||||||||| |     
T  11622353 tcaaccaaagaagcagctgactgatttgcttttcaaagatgaatcaaagagagaagtgatttcgatctatggtatgggaggtttagggaagacaacattg 11622452  T
Q  865 gcaaaacaagtctatgatgatccaaaagtcaagaagcgttttaggattcatgcttgggttaatctctctcaatctttcaaaatggaagagttgcttaaag 964  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||| | || ||||    
T  11622453 gcaaaacaagtttatgatgatccaaaagtcaagaaacgtttcaggattcatgcttgggttaatctctcccaatctatcaaaatggaagagatactgaaag 11622552  T
Q  965 accttgttgaacagattcatattctcatcggaaaaccagttccagaagcagttgaaaggatgaaaagtgacaagctgaaagagttgattaaggatttgct 1064  Q
    |||||||  || |  | |||| | |  | |||||||| | ||||| | || ||| || |||||| | |||| | |||||||||||||| ||| |||||||    
T  11622553 accttgtacaaaaactccataatgtttttggaaaacctgctccaggatcaattggaacgatgaataatgacgatctgaaagagttgataaagaatttgct 11622652  T
Q  1065 tcagagaagcaggtacctaattgtgcttgatgatgt 1100  Q
    ||||||||||||||| |||||||| |||||||||||    
T  11622653 tcagagaagcaggtatctaattgttcttgatgatgt 11622688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 708 - 971
Target Start/End: Complemental strand, 11605165 - 11604902
Alignment:
Q  708 aaatattccaacaggtgatgcccttttgctggaggaagctgatttagttggaattgaacaaccaaagaagcagctctgtgatttgcttttcaaagatgaa 807  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  11605165 aaatattccaacaggtgatgcccttttgctagatgaagctgatttagttggaattgatcaaccaaagaagcagctgtgtgatttgcttttcaatgatgaa 11605066  T
Q  808 tcaaatagggcagtgatttccatttatggtatgggaggtttagggaagacaacaatagcaaaacaagtctatgatgatccaaaagtcaagaagcgtttta 907  Q
     |||| || | ||||||||| || |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | ||| |    
T  11605065 ccaaagagagaagtgatttcaatctatggtatgggaggtttagggaagacaacattggcaaaacaagtctatgatgatccaaaagtcaagaaacatttca 11604966  T
Q  908 ggattcatgcttgggttaatctctctcaatctttcaaaatggaagagttgcttaaagaccttgt 971  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||| | || |||||||||||    
T  11604965 ggattcatgcttgggttaatctctcccaatctatcaaaatggaagagatactgaaagaccttgt 11604902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 11621606 - 11622033
Alignment:
Q  18 aagattgtttttggaattaagaccatgaaagctagacgcaaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtc 117  Q
    |||||| |||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| ||  || ||||    
T  11621606 aagattcttttcggcattaagaccatgaaagctagacacaaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtc 11621705  T
Q  118 caatcatacct---------tcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaattata 207  Q
    |||||||||||         |||||||||||||||||| |||||||||| ||||||||||||||| || ||| ||||||||||| || ||| |||||  |    
T  11621706 caatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattaattttgatagtaactaattgca 11621805  T
Q  208 tacaatacatgctcaatgcacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatctac 307  Q
    ||| | ||||  | ||| ||||||||| ||||||| ||||||||||||   |||||||||||| |||| ||||||| |||| ||||||||||||||||||    
T  11621806 tactagacatctttaatacacaaattagaactatattcatactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctac 11621905  T
Q  308 ggcatgctgatttatcaaagatattttaaaaatacctgatttcattgataatagtctctcgacagtactcctaaaattcagagagtcgctgataatgaac 407  Q
    |||||| |||||||||| |||||  |||| ||||||| |||| |||||||||| ||||||| ||| | ||||||||| | |||| | |||| ||||||||    
T  11621906 ggcatgttgatttatcagagata--ttaagaatacctaatttaattgataatattctctcggcagcaatcctaaaatactgagaattgctggtaatgaac 11622003  T
Q  408 acctaccggttagtgcttctccctcaactgg 438  Q
    |||||  | || |||||||||||||||||||    
T  11622004 accta-tgctttgtgcttctccctcaactgg 11622033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 36 - 204
Target Start/End: Complemental strand, 11605946 - 11605768
Alignment:
Q  36 aagaccatgaaagctagacgcaaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtccaatcatacct------- 128  Q
    |||||||||||| |||||| || ||| |||||| ||||  ||  |||||||||||||||||||| |||| | ||  |||||||||| ||| ||           
T  11605946 aagaccatgaaacctagacacagaatagcttcagatattaaaaaaatcaaatccaaagttgaagctatcactcaaggacgtccaatgatatctggtgtag 11605847  T
Q  129 --tcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaatt 204  Q
      ||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||| ||||||||||||    
T  11605846 gttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaatt 11605768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 12686617 - 12686700
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  12686617 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 12686700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 12692719 - 12692802
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  12692719 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 12692802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 14484668 - 14484602
Alignment:
Q  139 gtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaatt 204  Q
    ||||||||| ||||||||| |||||||||||| ||||| |||||||| |||||| ||||||||||||    
T  14484668 gtcaaaggcgttcatcaaggcttgatagtcaaagtaatgttggaatttattttgataataattaatt 14484602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 32094660 - 32094743
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| ||||||| || |||||||    
T  32094660 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagttaatataatt 32094743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 701
Target Start/End: Original strand, 19060217 - 19060295
Alignment:
Q  623 tagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||||| |||| ||| ||||||| ||||||||| |||||||||||||  |||| |||||  ||||||||| |||||||    
T  19060217 tagaaatctaataagccttattacttaatttgatcactaatcaattaagtctccaaattgacaaatagctaatataatt 19060295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 640 - 701
Target Start/End: Complemental strand, 20499837 - 20499776
Alignment:
Q  640 ttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||||| ||||||||| ||||||||||||| ||||  ||||| |||||||||| |||||||    
T  20499837 ttattacttaatttgatcactaatcaattaagactcacaattgataaatagctaatataatt 20499776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 681
Target Start/End: Original strand, 22647931 - 22647989
Alignment:
Q  623 tagaaatataattagctttattacataatttgataactaatcaattaaaactcctaatt 681  Q
    ||||||| |||||||  ||||||| |||||||||||||||| |||||| ||||| ||||    
T  22647931 tagaaatctaattagtcttattacttaatttgataactaattaattaagactccaaatt 22647989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 9935004 - 9934921
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||||||||||| ||||||||| ||||||||||||| ||||  ||||| |||||| ||| |||||||    
T  9935004 caaaatagaaatctaattagctttattacttaatttgatcactaatcaattaagactcacaattgataaataactaatataatt 9934921  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 32896733 - 32896650
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  32896733 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 32896650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 614 - 701
Target Start/End: Original strand, 5542596 - 5542683
Alignment:
Q  614 ttatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| |||||||||| |||||||  ||||||| ||||||||| |||||||||||||  |||  ||||| |||||| ||| |||||||    
T  5542596 ttatccaattagaaatctaattagtcttattacttaatttgatcactaatcaattaaggctctaaattgataaataactaatataatt 5542683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 32890609 - 32890526
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||   ||  ||||| |||||||||| |||||||    
T  32890609 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaagggtcacaattgataaatagctaatataatt 32890526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 36818693 - 36818610
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||| | ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  36818693 caaaatagaaatctaattaaccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 36818610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 42993438 - 42993521
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||| ||| |||||||    
T  42993438 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaataactaatataatt 42993521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 10705573 - 10705476
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| ||| |||||  |||||||||| |||| || |||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  10705573 tatttaattaattattcaattagaaatctaat-agttttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 10705476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 42033532 - 42033435
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| ||| |||||| |||||||||| |||| | ||| ||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  42033532 tatttaattaattatctaattagaaatctaataacctt-attacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 42033435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 10699764 - 10699667
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| ||| |||||| |||||||||| |||| ||| | ||||| ||||||||| |||||||||||||  |||  ||||| |||||| ||| |||||||    
T  10699764 tatttaattaattatccaattagaaatctaat-agcctaattacttaatttgatcactaatcaattaaggctcacaattgataaataactagtataatt 10699667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 33735417 - 33735483
Alignment:
Q  139 gtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaatt 204  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||||| |||||| ||||||||||||    
T  33735417 gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaatt 33735483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 13455820 - 13455737
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  13455820 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 13455737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 13461761 - 13461678
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  13461761 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 13461678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 35085118 - 35085201
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  35085118 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 35085201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 35091091 - 35091174
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  35091091 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 35091174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 36750135 - 36750052
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  36750135 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 36750052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 603 - 701
Target Start/End: Original strand, 7771611 - 7771708
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| ||| |||||| |||||||||| |||| ||||||||||| ||||||||| | ||||||| ||| |||   ||||| |||||||||| |||||||    
T  7771611 tatttaattaattatccaattagaaatctaat-agctttattacttaatttgatcagtaatcaactaagacttacaattgataaatagctaatataatt 7771708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 631 - 701
Target Start/End: Complemental strand, 23283951 - 23283881
Alignment:
Q  631 taattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||| ||||||| ||||||||| ||||||||||||| ||||| ||||| |||||| ||| |||||||    
T  23283951 taataagccttattacttaatttgatcactaatcaattaagactccaaattgataaataactaatataatt 23283881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 701
Target Start/End: Complemental strand, 23343279 - 23343201
Alignment:
Q  623 tagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||||| |||| ||| ||||||| ||||||||| |||||||||||||  |||| ||||| ||||||| || |||||||    
T  23343279 tagaaatctaataagccttattacttaatttgatcactaatcaattaaggctccaaattgataaatagttaatataatt 23343201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 12116 - 12033
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  12116 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 12033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 618 - 670
Target Start/End: Complemental strand, 6243 - 6191
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaa 670  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||    
T  6243 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaa 6191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 28421397 - 28421480
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  28421397 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 28421480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 618 - 670
Target Start/End: Original strand, 5979614 - 5979666
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaa 670  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||    
T  5979614 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaa 5979666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 4580760 - 4580843
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  4580760 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 4580843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 614 - 701
Target Start/End: Original strand, 21191305 - 21191392
Alignment:
Q  614 ttatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| |||||||||| ||||||||  |||||| ||||||||| |||||||||||||  |||  ||||| |||||| ||| |||||||    
T  21191305 ttatccaattagaaatctaattagccatattacttaatttgatcactaatcaattaaggctctaaattgataaataactaatataatt 21191392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 626 - 701
Target Start/End: Complemental strand, 25353926 - 25353851
Alignment:
Q  626 aaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  25353926 aaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 25353851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 701
Target Start/End: Original strand, 12801982 - 12802060
Alignment:
Q  623 tagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||||| |||| ||||||||||| ||| ||||| |||||||||||||  |||| |||||  ||||||||| |||||||    
T  12801982 tagaaatctaataagctttattacttaaattgatcactaatcaattaaggctccaaattgacaaatagctaatataatt 12802060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 603 - 701
Target Start/End: Original strand, 21770989 - 21771086
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| ||| |||||  |||||||||| |||| || |||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  21770989 tatttaattaattattcaattagaaatctaat-agttttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 21771086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 11840164 - 11840247
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  11840164 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 11840247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 26429856 - 26429939
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  26429856 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 26429939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 42191659 - 42191742
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  42191659 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 42191742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 42197601 - 42197684
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  42197601 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 42197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 603 - 671
Target Start/End: Complemental strand, 46656415 - 46656348
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaa 671  Q
    ||||| ||| |||||| |||||||||| |||| ||||||||||| ||||||||| ||||||||||||||    
T  46656415 tatttaattaattatccaattagaaatctaat-agctttattacttaatttgatcactaatcaattaaa 46656348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 10238651 - 10238734
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||  |||||||||||||  |||  ||||| |||||||||| |||||||    
T  10238651 caaaatagaaatctaattagccttattacttaatttgaacactaatcaattaaggctcacaattgataaatagctaatataatt 10238734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 10244773 - 10244856
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||  |||||||||||||  |||  ||||| |||||||||| |||||||    
T  10244773 caaaatagaaatctaattagccttattacttaatttgaacactaatcaattaaggctcacaattgataaatagctaatataatt 10244856  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 17056230 - 17056313
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| ||||||| || |||||||    
T  17056230 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagataatataatt 17056313  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 17601972 - 17602055
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||  |||||||||||||  |||  ||||| |||||| ||| |||||||    
T  17601972 caaaatagaaatctaattagccttattacttaatttgaccactaatcaattaaggctctaaattgataaataactaatataatt 17602055  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 49510362 - 49510305
Alignment:
Q  242 aatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaacctta 299  Q
    |||||||  ||||||| ||||||||||||| |||||| |||||||||| |||| ||||    
T  49510362 aatcatatattagtgtagaagtcaaataaacatatgagcatgcatatctacaatctta 49510305  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 25275485 - 25275568
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  25275485 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 25275568  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 25381974 - 25382057
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  25381974 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 25382057  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 50305918 - 50305835
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  50305918 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 50305835  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 27954896 - 27954799
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| ||| ||||||||||||||||| |||| ||| ||||||| ||||||||| |||||||||||||  |||  ||||| |||||| ||| |||||||    
T  27954896 tatttaattaattatcaaattagaaatctaat-agccttattacttaatttgatcactaatcaattaagcctcacaattgataaataactaatataatt 27954799  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 1077965 - 1077882
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||  ||||||| ||||||||| |||||||||||||  |||  ||||| |||||||||| |||||||    
T  1077965 caaaatagaaatctaattagtcttattacttaatttgatcactaatcaattaaggctcacaattgataaatagctaatataatt 1077882  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 643 - 701
Target Start/End: Original strand, 24927232 - 24927290
Alignment:
Q  643 ttacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||||| ||||||||||||| ||||| ||||| |||||||||| |||||||    
T  24927232 ttacttaatttgatcactaatcaattaagactccaaattgataaatagctaatataatt 24927290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 701
Target Start/End: Original strand, 24964148 - 24964226
Alignment:
Q  623 tagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||||| | || ||||||||||| ||||||||| |||||||||||||  || | ||||| |||||||||| |||||||    
T  24964148 tagaaatcttataagctttattacttaatttgatcactaatcaattaaggcttcaaattgataaatagctaatataatt 24964226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 618 - 670
Target Start/End: Original strand, 25387941 - 25387993
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaa 670  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||    
T  25387941 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaa 25387993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 44409735 - 44409638
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| ||| |||||| |||||||||  |||| ||| ||||||| |||||| || |||||||||||||  |||  ||||| |||||||||| |||||||    
T  44409735 tatttaattaattatccaattagaaacctaat-agccttattacctaatttaatcactaatcaattaaggctcacaattgataaatagctaatataatt 44409638  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 603 - 701
Target Start/End: Original strand, 6257629 - 6257726
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| ||| |||||| |||||||||| |||| ||||||||||| ||||||||| ||||||||| |||  |||  ||||| |||||||||| |||||||    
T  6257629 tatttaattaattatccaattagaaatctaat-agctttattacttaatttgatcactaatcaactaaggctcacaattgataaatagctaatataatt 6257726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 701
Target Start/End: Complemental strand, 24287708 - 24287625
Alignment:
Q  618 caaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||  |||  ||||  |||||||||| |||||||    
T  24287708 caaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctcacaatttataaatagctaatataatt 24287625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 603 - 701
Target Start/End: Original strand, 26971979 - 26972076
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| ||| |||||| |||||||||| |||| | | |||| || ||||||||| ||||||||||||| ||||  ||||| |||||||||| |||||||    
T  26971979 tatttaattaattatccaattagaaatctaat-atccttatcacttaatttgatcactaatcaattaagactcacaattgataaatagctaatataatt 26972076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 626 - 701
Target Start/End: Complemental strand, 49976314 - 49976239
Alignment:
Q  626 aaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    |||| |||| ||| ||||||| ||||||||| |||||||||||||  |||| ||||  |||||||||| |||||||    
T  49976314 aaatctaataagccttattacttaatttgatcactaatcaattaaggctccaaattaataaatagctaatataatt 49976239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 701
Target Start/End: Complemental strand, 4632091 - 4632013
Alignment:
Q  623 tagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||||| |||| | | ||||||| ||||||||| ||||||||||||| ||| | ||||| |||||| ||| |||||||    
T  4632091 tagaaatctaataaaccttattacttaatttgattactaatcaattaagacttcaaattgataaataactaatataatt 4632013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 50168330 - 50168233
Alignment:
Q  603 tatttgattcattatcaaattagaaatataattagctttattacataatttgataactaatcaattaaaactcctaattgttaaatagctattataatt 701  Q
    ||||| ||| |||||| |||||||||| |||| ||| || |||| | ||||||  ||||||||||||| ||||  ||||| |||||||||| |||||||    
T  50168330 tatttaattaattatccaattagaaatctaat-agccttgttacttgatttgaccactaatcaattaagactcacaattgataaatagctaatataatt 50168233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 53807338 - 53807378
Alignment:
Q  197 aattaattatatacaatacatgctcaatgcacaaattaaaac 238  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  53807338 aattaattatatacaat-catgttcaatgcacaaattaaaac 53807378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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