View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2797_low_11 (Length: 454)
Name: NF2797_low_11
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 108 - 449
Target Start/End: Complemental strand, 2012790 - 2012449
Alignment:
| Q |
108 |
tgttatacacgtcctcagttattgtcctatatgtatctaacaattataaggtagtgttgactatagggtgaaattctcaatattgtgttaggtagaagtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2012790 |
tgttatacacgtcctcagttattgtcctatatgtatctaacaattataaggtagtgttgactatagggtgaaattctcaatattgtgttaggtagaagtt |
2012691 |
T |
|
| Q |
208 |
gtgaaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaaccatgaacttggctttaaaatctatacaagtctttggctaggtgag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2012690 |
gtgaaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaaccatgaacttggctttaaaatctatacaagtctttggctaggtgag |
2012591 |
T |
|
| Q |
308 |
tttcattcatgaaattggcctcaaatttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaatt |
407 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2012590 |
tttcattcatgaacttggcctcaaatttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcattt |
2012491 |
T |
|
| Q |
408 |
ctcaaagttacttatccagcttcatccggacattcatctcac |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2012490 |
ctcaaagttacttatccagcttcatccggacattcatgtcac |
2012449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 1964687 - 1964771
Alignment:
| Q |
19 |
ttcgggatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatggtgttcttgttaatagcttc |
103 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1964687 |
ttcgggatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatggtgttcttgttaatagcttc |
1964771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 2012002 - 2011923
Alignment:
| Q |
24 |
gatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatggtgttcttgttaatagcttc |
103 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2012002 |
gatcaagtcaagcttacaaatacttccttcaacatgttaaaagtttaagttttgctgatggtgttcttgttaatagcttc |
2011923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 434
Target Start/End: Complemental strand, 2019347 - 2019246
Alignment:
| Q |
333 |
tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat |
432 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||||||||||| || ||||| |||||| |||| |||||||||||||| ||| ||||| | ||||||||| |
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|
| T |
2019347 |
tttcatggagaaaacagttcatattgcagttgttccaggtgttggatatggccacttattcccgattcttcaattctccaagctacttgttcagcttcat |
2019248 |
T |
|
| Q |
433 |
cc |
434 |
Q |
| |
|
|| |
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|
| T |
2019247 |
cc |
2019246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 1968628 - 1968707
Alignment:
| Q |
24 |
gatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatggtgttcttgttaatagcttc |
103 |
Q |
| |
|
|||||||||||| ||||||||||||||| | || | ||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
1968628 |
gatcaagtcaagtttacaaacacttcctcccactttttaaacttttaagttttgctgatggtgtttttgttaatagcttc |
1968707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 2008387 - 2008308
Alignment:
| Q |
24 |
gatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatggtgttcttgttaatagcttc |
103 |
Q |
| |
|
|||||||||||| ||||||||||||||| | | ||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
2008387 |
gatcaagtcaagcttacaaacacttcctcccatttgttaaacttttaagttctgctgatggtgttcttgttaatagcttc |
2008308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 449
Target Start/End: Original strand, 1968048 - 1968181
Alignment:
| Q |
317 |
tgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagt |
415 |
Q |
| |
|
|||| ||| ||||||||||| ||||| |||||| |||| ||||| |||||||||||||| || ||| | || || |||||||||||||||||||| ||| |
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|
| T |
1968048 |
tgaacttgacctcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctccaaga |
1968147 |
T |
|
| Q |
416 |
tacttatccagcttcatccggacattcatctcac |
449 |
Q |
| |
|
|||| | || |||||||| ||| ||||| |||| |
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|
| T |
1968148 |
gacttgttcaacttcatccagactttcatgtcac |
1968181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 2005005 - 2004928
Alignment:
| Q |
26 |
tcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatggtgttcttgttaatagcttc |
103 |
Q |
| |
|
|||||||||| ||||||||| ||||| || | ||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
2005005 |
tcaagtcaagcttacaaacaattcctcgcacttcttaaacttttaagttttgctgatggtgttcttgttaatagcttc |
2004928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 409
Target Start/End: Original strand, 1964450 - 1964581
Alignment:
| Q |
277 |
taaaatctatacaagtctttggctaggtgagtttcattcatgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtc |
375 |
Q |
| |
|
||||||||||| | ||||| |||||||||| |||||| ||| |||| ||| |||||| ||||| ||||| ||||||||||| |||||||||||||| |
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|
| T |
1964450 |
taaaatctatataggtcttgggctaggtgactttcat----gaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgtt |
1964545 |
T |
|
| Q |
376 |
gggtatgga--cacttagtccctattcttcaattct |
409 |
Q |
| |
|
|||||| | || |||||| ||||||||||||||| |
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|
| T |
1964546 |
gggtatatatccatttagtctctattcttcaattct |
1964581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 434
Target Start/End: Complemental strand, 2008956 - 2008849
Alignment:
| Q |
328 |
tcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccag |
426 |
Q |
| |
|
||||||||| ||||| |||||| |||| ||||| |||||||||||||| || ||| | || || |||||||||||||||||||| ||| |||| | ||| |
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|
| T |
2008956 |
tcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcag |
2008857 |
T |
|
| Q |
427 |
cttcatcc |
434 |
Q |
| |
|
|||||||| |
|
|
| T |
2008856 |
cttcatcc |
2008849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 434
Target Start/End: Complemental strand, 2013494 - 2013396
Alignment:
| Q |
336 |
catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatcc |
434 |
Q |
| |
|
|||||| |||| |||||| ||||| |||||||||||||| || ||| | |||||| |||| ||||||||||| || ||| ||||| | ||||||||||| |
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|
| T |
2013494 |
catggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaattttcgaagctacttgttcagcttcatcc |
2013396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 434
Target Start/End: Original strand, 1962465 - 1962566
Alignment:
| Q |
333 |
tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat |
432 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||||| ||||| || ||| | |||||| |||| |||||||||||||| || ||||| | ||||||||| |
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|
| T |
1962465 |
tttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcat |
1962564 |
T |
|
| Q |
433 |
cc |
434 |
Q |
| |
|
|| |
|
|
| T |
1962565 |
cc |
1962566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 434
Target Start/End: Complemental strand, 2015960 - 2015863
Alignment:
| Q |
337 |
atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatcc |
434 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| |||||||||||||||| ||| |||| | ||||||||||| |
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|
| T |
2015960 |
atggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatcc |
2015863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 2005567 - 2005493
Alignment:
| Q |
336 |
catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctc |
410 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| |||||||||||||||| |
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|
| T |
2005567 |
catggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctc |
2005493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 270 - 444
Target Start/End: Original strand, 18189366 - 18189541
Alignment:
| Q |
270 |
ttggctttaaaatctatacaagtctttggctaggtgagtttcattcatgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttcc |
368 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||| || || ||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
18189366 |
ttggctttaaaatctatacaagtttttggctgcatgagtttcattcatgaacttagcatcaaatttccatggataaaacaattcacattgcagttgttcc |
18189465 |
T |
|
| Q |
369 |
aggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatccggacattcat |
444 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
18189466 |
aggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatcttcatccagacattcat |
18189541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 18189278 - 18189339
Alignment:
| Q |
202 |
gaagttgtgaaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaacc |
263 |
Q |
| |
|
||||||||||||| ||| | |||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
18189278 |
gaagttgtgaaatatagaaacactggtttataccaaaaaatcttaaaaccaaactttcaacc |
18189339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 450
Target Start/End: Original strand, 5901644 - 5901761
Alignment:
| Q |
333 |
tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat |
432 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| ||||||||| ||||| | || |||||| |||||||| ||||||| ||| ||||| | ||||| ||| |
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|
| T |
5901644 |
tttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaagctacttgttcagctccat |
5901743 |
T |
|
| Q |
433 |
ccggacattcatctcact |
450 |
Q |
| |
|
|| ||| ||||| ||||| |
|
|
| T |
5901744 |
ccagactttcatgtcact |
5901761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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