View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_low_12 (Length: 443)
Name: NF2797_low_12
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 260 - 432
Target Start/End: Complemental strand, 32626325 - 32626151
Alignment:
| Q |
260 |
cttttactcatcaacatcaatcaccttatcttgttgtgattcaaagataaagttcacgactaagaaaaagatctacattatataataaatatgaaacaaa |
359 |
Q |
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| T |
32626325 |
cttttattcatcaacatcaatcaccttatcttgttgtgattcaaagataaagttcacgcctaagaaaaagatctacattatataataaatatgaaacaaa |
32626226 |
T |
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| Q |
360 |
gtaaaacatatttatatgatac-tttctgctttggcaatccatccaaaagggtttacat-gctctatagcttcat |
432 |
Q |
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| T |
32626225 |
gtaaaacatatttatatgatacttttctgctttggcaatccatccaagagggtttacatagctctatagtttcat |
32626151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 32626526 - 32626398
Alignment:
| Q |
20 |
ttttgtcttagtatacaatttatgacaatttgaaaatcgtcttcagattaaatgtttgaatccagttgaaattaaatattcattttaaacatatcatttt |
119 |
Q |
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|||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32626526 |
ttttgtcttagtatacggtttatgacaatttaaaaatcatcttcagattaaatgtttgaatccagttgagattaaatattcattttaaacatatcatttt |
32626427 |
T |
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| Q |
120 |
gtgtctcatggatacacacggatttttgt |
148 |
Q |
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| T |
32626426 |
gtgtcacatggatacacacggatttttgt |
32626398 |
T |
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