View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2797_low_16 (Length: 413)

Name: NF2797_low_16
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2797_low_16
NF2797_low_16
[»] chr1 (1 HSPs)
chr1 (65-413)||(14597098-14597446)


Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 65 - 413
Target Start/End: Original strand, 14597098 - 14597446
Alignment:
Q  65 gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14597098 gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca 14597197  T
Q  165 gacacagattctgctactgtaggagcatcgagtggttcacgaggtttcctaagaacacctcctggacgtccatacctgacgttaggatgatctgcaagag 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14597198 gacacagattctgctactgtaggagcatcgagtggttcacgaggtttcctaagaacacctcctggacgtccatacctgacgttaggatgatctgcaagag 14597297  T
Q  265 ggcgaccttggaactcagcgactggtatgctatcagccaacatggatgaattaccgaatcgcttgggcaacaagtttgaatctaaatcttgatcaaactc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14597298 ggcgaccttggaactcagcgactggtatgctatcagccaacatggatgaattaccaaatcgcttgggcaacaagtttgaatctaaatcttgatcaaactc 14597397  T
Q  365 actggcattcaaggccggtgtagtttcacagacttcatccgtacattca 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14597398 actggcattcaaggccggtgtagtttcacagacttcatccgtacattca 14597446  T

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