View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2797_low_17 (Length: 408)
Name: NF2797_low_17
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 14597437 - 14597825
Alignment:
| Q |
1 |
cgtacattcatgtttaggatcttttgtgtcccaatcacctgagggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597437 |
cgtacattcatgtttaggatcttttgtgtcccaatcacctgagggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataa |
14597536 |
T |
|
| Q |
101 |
aatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597537 |
aatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatcttt |
14597636 |
T |
|
| Q |
201 |
gggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatc |
300 |
Q |
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| T |
14597637 |
gggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatc |
14597736 |
T |
|
| Q |
301 |
aagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtgatcataac |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14597737 |
aagattgagaatgaatggtccatttgacaagattgcagatgctcgaactagtgcattcatggcaccagctttcttgttgtgatcataac |
14597825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 31 - 389
Target Start/End: Complemental strand, 14611038 - 14610680
Alignment:
| Q |
31 |
ccaatcacctgagggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctc |
130 |
Q |
| |
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||||||||| | ||||||||||||||| ||||||||||| | ||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
14611038 |
ccaatcacccgtgggagggtcaaatccgtacaatgcaaatctcctgaacatgcacccggttcccacataaaatggaccttggagaccatcaagggctctc |
14610939 |
T |
|
| Q |
131 |
atgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgc |
230 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14610938 |
atgttcccgtcaaagaacacggtgttgtgattggcatagcgatctgagggatcaataccttcaaatctttgagggaactgaatatagcatatgtcttcgc |
14610839 |
T |
|
| Q |
231 |
cacctttgtccagcatgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaa |
330 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
14610838 |
cacctttgtccatcatgaaacacattccttcttttactgccttgcaattatagatatagtgatcacaatcaagattgagaatgaatggcccatttgatag |
14610739 |
T |
|
| Q |
331 |
gattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtgatcataac |
389 |
Q |
| |
|
|| ||||||||||| ||| | ||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
14610738 |
gactgcagatgctcgaacaagtgcattcatggcaccggctttcttgttatgatcataac |
14610680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 389
Target Start/End: Original strand, 29917837 - 29918182
Alignment:
| Q |
44 |
ggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaa |
143 |
Q |
| |
|
||||| ||||| ||||| | ||||||| ||||||| || |||||||| ||||| | ||| |||||||| ||||| |||||||||||||| | |||| |
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| T |
29917837 |
ggaggatcaaaaccataaagagcaaaccttctaaacagacagccggttcctacatagactgggccttgaagtccatcaagggctctcatgttaacatcaa |
29917936 |
T |
|
| Q |
144 |
agaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccag |
243 |
Q |
| |
|
|||| || ||||||||||| ||||| | ||| |||||||||||||| ||||| ||||| ||||| || | |||||| | | || ||||| |||| |
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|
| T |
29917937 |
agaagacggtgttgtgattagcatatctatcagagggatcaataccctcaaacctttgagggaattggacatagcagaggcgatcaccaccacgatccat |
29918036 |
T |
|
| Q |
244 |
catgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgct |
343 |
Q |
| |
|
||| |||||||||||||| | | ||| || | || || |||||||||||||| || || || || || || || || || |||| || || || ||| |
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| T |
29918037 |
cataaagcacataccttccctcattgctttggagttgtatatatagtgatcacagtcgaggttaagtataaagggaccgttggacatgacagccgaggct |
29918136 |
T |
|
| Q |
344 |
ctaactaatgcattcatggcaccagctttcttgttgtgatcataac |
389 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||| |||| |
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|
| T |
29918137 |
ctaaccaatgcattcatggccccagcttttttgttgtgatcgtaac |
29918182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 387
Target Start/End: Complemental strand, 44634492 - 44634185
Alignment:
| Q |
80 |
atgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagg |
179 |
Q |
| |
|
||||| || ||||| ||||| | ||||||||| | |||||| || ||||||||| | | |||||||| || |||||||| || ||||| ||||| || |
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|
| T |
44634492 |
atgcagccagttccaacatacattggaccttgtaaaccatcaagagctctcatgctcacatcaaagaacacggtgttgtggtttgcatatcgatcactgg |
44634393 |
T |
|
| Q |
180 |
gatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaatt |
279 |
Q |
| |
|
| |||||||||||||| ||||| ||||| |||| ||| ||||| || |||||| |||| ||||| |||||||||||||| | | ||| | || |
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| T |
44634392 |
ggtcaataccttcaaacctttgagggaattgaacataacatatcctgtcaccacctctgtcaagcataaagcacataccttccctcaaggccaaggagtt |
44634293 |
T |
|
| Q |
280 |
atagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttg |
379 |
Q |
| |
|
||||| || |||||||| ||||||||||||| |||||||||||| |||| || ||| | || ||| | ||||||||||| ||||||||||||||| |
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|
| T |
44634292 |
gtagatgtaatgatcacagtcaagattgagaacgaatggtccattggacatgacagcactagttcgaacaagagcattcatggcgccagctttcttgttg |
44634193 |
T |
|
| Q |
380 |
tgatcata |
387 |
Q |
| |
|
|||||||| |
|
|
| T |
44634192 |
tgatcata |
44634185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 88 - 389
Target Start/End: Complemental strand, 47919349 - 47919048
Alignment:
| Q |
88 |
ggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaata |
187 |
Q |
| |
|
|||||| ||||| || || |||||||| ||||| |||||||||||||| | |||||||| |||||||||||||| ||||| | ||| |||||||||||| |
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|
| T |
47919349 |
ggttcctacatagaacgggccttgaagtccatcaagggctctcatgttaacatcaaagaagacagtgttgtgattagcatatctatcagagggatcaata |
47919250 |
T |
|
| Q |
188 |
ccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattatagatat |
287 |
Q |
| |
|
|| ||||| || |||||||| || | |||||| | | || ||||| |||| ||| |||||||||||||| | | ||| || | || || |||| |
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|
| T |
47919249 |
ccctcaaacctctgggggaattggacatagcagaggcgatccccaccacgatccatcataaagcacataccttccctcattgctttggagttgtaaatat |
47919150 |
T |
|
| Q |
288 |
agtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtgatcata |
387 |
Q |
| |
|
|||||||||| || |||||||| || || || || || |||| || || || ||||| || |||||||||| || |||||||| ||||||||||| || |
|
|
| T |
47919149 |
agtgatcacagtcgagattgagtataaaaggaccgttggacatgacagctgaagctctgaccaatgcattcactgccccagcttttttgttgtgatcgta |
47919050 |
T |
|
| Q |
388 |
ac |
389 |
Q |
| |
|
|| |
|
|
| T |
47919049 |
ac |
47919048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 41490529 - 41490666
Alignment:
| Q |
82 |
gcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgaggga |
181 |
Q |
| |
|
||||||||| || ||||| | ||||| |||| ||||||||| |||| ||| || | |||||||| |||||||||||||||||||| ||||| || || |
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|
| T |
41490529 |
gcatccggtaccaacatatacaggaccctgaataccatcgagagctcgcatattgacatcaaagaagacagtgttgtgattggcataccgatctgatggg |
41490628 |
T |
|
| Q |
182 |
tcaataccttcaaatctttgggggaactgaatatagca |
219 |
Q |
| |
|
||||| ||||||||||||||||| || |||| |||||| |
|
|
| T |
41490629 |
tcaattccttcaaatctttggggaaattgaacatagca |
41490666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 387
Target Start/End: Original strand, 12193221 - 12193526
Alignment:
| Q |
82 |
gcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgaggga |
181 |
Q |
| |
|
|||||| || || ||||||| ||||| |||| ||||||||| |||||||| || | |||||||| |||||||| ||||||||||| ||||| || || |
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|
| T |
12193221 |
gcatccagtaccaacataaacaggaccctgaataccatcgagagctctcatattgacatcaaagaagacagtgttatgattggcataccgatctgatggg |
12193320 |
T |
|
| Q |
182 |
tcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattat |
281 |
Q |
| |
|
|| || |||||||| ||||| || || |||| ||||| || | || ||| | ||||| ||| ||||||||||||| | | ||||| | | |||| |
|
|
| T |
12193321 |
tcgattccttcaaacctttgaggaaattgaacatagctgatcttgtccccatcgcggtccatcatatagcacataccttccctgattgcctcagagttat |
12193420 |
T |
|
| Q |
282 |
agatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtg |
381 |
Q |
| |
|
| || || || ||||| |||||||| || ||||| || ||||| |||| | || || |||| ||| || ||||||||||| || |||||||| ||||| |
|
|
| T |
12193421 |
atatgtaatggtcacagtcaagattaagtatgaaaggaccattagacattacggctgaagctcgaaccaaggcattcatggcccccgctttcttattgtg |
12193520 |
T |
|
| Q |
382 |
atcata |
387 |
Q |
| |
|
|||||| |
|
|
| T |
12193521 |
atcata |
12193526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 15418526 - 15418587
Alignment:
| Q |
137 |
ccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatct |
198 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15418526 |
ccgtcaaagaagactgtgttatgatttgcatatcgatccgagggatcaatcccttcaaatct |
15418587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 15418044 - 15418138
Alignment:
| Q |
44 |
ggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttcc |
138 |
Q |
| |
|
||||| ||||||||||| | |||| | | |||||||||||| |||||||| ||||| | ||||||||| |||||||| | |||||||| ||||| |
|
|
| T |
15418044 |
ggaggttcaaatccatagagtgcatatctcctaaacatgcaaccggttccgacatacattggaccttgtagaccatccaatgctctcatatttcc |
15418138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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