View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_low_18 (Length: 396)
Name: NF2797_low_18
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 379
Target Start/End: Original strand, 4596963 - 4597335
Alignment:
| Q |
10 |
attattcttatgtgcacaaacatggtttattttgggcatgttattctata--tatagaggttgattttatataatctgaatcttcattcttttttctctc |
107 |
Q |
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| T |
4596963 |
attattcttatgtgcacaaacatggtttattttgggcatgttattctatatatatagaggttgattttatataatctgaatcttcattcttttttctctc |
4597062 |
T |
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| Q |
108 |
ctatttttacaaacaaccaattttcaactatcatgtcacatggagggtgtgattgaaattggcttttgtttttacaacataggccatagaaatcattttg |
207 |
Q |
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| T |
4597063 |
ctatttttacaaacaaccaattttcaactatcatgtcacatggagggtgtgattgaaattggcttttgtttttacaacataggccatagagatcattttg |
4597162 |
T |
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| Q |
208 |
gtgtcaagcaagggaattgatttagaca-ttttggtttgttgaaagtgttggatggtaggtggttatatttcttcatttaccaacaacgtagcagcaact |
306 |
Q |
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| T |
4597163 |
gtttgaagcaagggaattgatttagacatttttggtttgttgaaattgttggatggtaggtggttatatttcttcatttaccaacaacgtagcagcaact |
4597262 |
T |
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| Q |
307 |
accacagcttgtggtggaaaatttgacaagaaattctaggtaattagcatgtttaaagggaaatgcctaaggt |
379 |
Q |
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| T |
4597263 |
accacagcttgtggtggaaaatttgacaagaaattctaggtaattagcatgtttaaagggaaatgcctaaggt |
4597335 |
T |
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