View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_low_19 (Length: 393)
Name: NF2797_low_19
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Complemental strand, 18168123 - 18167759
Alignment:
| Q |
11 |
cagagagatacagtaagagcagcaacagaatttgtatcaaaaaatcatctacctcatgagacacaggatcaaatactatcacacttatgtctcaagttca |
110 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18168123 |
cagagagatacagtgagagcagcaacagaatttgcatcaaaaaatcatctacctcatgagacacaggatcaaatactatcacacttatgtctcaagttca |
18168024 |
T |
|
| Q |
111 |
aaacagaaggactaaaacagcaagaaacaataaatggcatgccgaaagcaattcgcgcaagcattgcacaccatcttttttatcctgttgtgcagaaatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18168023 |
aaacagaaggactaaaacagcaagaaacaataaatggcatgccgaaagcaattcgcgcaagcattgcacaccatcttttttatcctgttgtgcagaaatc |
18167924 |
T |
|
| Q |
211 |
ctatctcttccaaagagtttcacatgattttctatttcaactggtacattttcacttttattattattggaaatatattgtctattacaaaggtctaatg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18167923 |
ctatctcttccaaagagtttcacatgattttctatttcaactggtacattttcacttttattattattggaaatatattgtctattac-aaggtctaatg |
18167825 |
T |
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| Q |
311 |
taagtaactttgtaacaataggttacagaaatagaagctgagtattttccacctaaagtagatgtt |
376 |
Q |
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| T |
18167824 |
taagtaactttgtaacaataggttacagaaatagaagcagagtattttccacctaaagtagatgtt |
18167759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Complemental strand, 18631680 - 18631315
Alignment:
| Q |
11 |
cagagagatacagtaagagcagcaacagaatttgtatcaaaaaatcatctacctcatgagacacaggatcaaatactatcacacttatgtctcaagttca |
110 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18631680 |
cagagagatacagtgagagcagcaacagaatttgcatcaaaaaatcatctacctcatgagacacaggatcaaatactatcacacttatgtctcaagttca |
18631581 |
T |
|
| Q |
111 |
aaacagaaggactaaaacagcaagaaacaataaatggcatgccgaaagcaattcgcgcaagcattgcacaccatcttttttatcctgttgtgcagaaatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18631580 |
aaacagaaggactaaaacagcaagaaacaataaatggcatgccgaaagcaattcgcgcaagcattgcacaccatcttttttatcctgttgtgcagaaatc |
18631481 |
T |
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| Q |
211 |
ctatctcttccaaagagtttcacatgattttctatttcaactggtacattttcac-ttttattattattggaaatatattgtctattacaaaggtctaat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18631480 |
ctatctcttccaaagagtttcacatgattttctatttcaactggtacattttcactttttattattattggaaatatattgtctattac-aaggtctaat |
18631382 |
T |
|
| Q |
310 |
gtaagtaactttgtaacaataggttacagaaatagaagctgagtattttccacctaaagtagatgtt |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18631381 |
gtaagtaactttgtaacaataggttacagaaatagaagcagagtattttccacctaaagtagatgtt |
18631315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 6386861 - 6386743
Alignment:
| Q |
110 |
aaaacagaaggactaaaacagcaagaaacaataaatggcatgccgaaagcaattcgcgcaagcattgcacaccatcttttttatcctgttgtgcagaaat |
209 |
Q |
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|||||||||||||| || ||||||||| || |||||| | || || || ||||| ||||||| ||||||||||| |||| ||||||||||||||| |
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| T |
6386861 |
aaaacagaaggactgaagcagcaagaagcattaaatgatcttccaaaggcgattcggtcaagcatcgcacaccatctcttttttcctgttgtgcagaagg |
6386762 |
T |
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| Q |
210 |
cctatctcttccaaagagt |
228 |
Q |
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||| ||||||||| |||| |
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| T |
6386761 |
tctacctcttccaaggagt |
6386743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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