View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2797_low_20 (Length: 389)

Name: NF2797_low_20
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2797_low_20
NF2797_low_20
[»] chr5 (15 HSPs)
chr5 (293-378)||(10223277-10223362)
chr5 (20-84)||(10223667-10223731)
chr5 (173-259)||(10223442-10223529)
chr5 (155-233)||(5361503-5361582)
chr5 (82-233)||(6641938-6642095)
chr5 (149-233)||(6642070-6642155)
chr5 (149-233)||(8942882-8942967)
chr5 (82-233)||(27496022-27496179)
chr5 (125-233)||(30004075-30004184)
chr5 (149-233)||(42092228-42092313)
chr5 (134-233)||(28574661-28574761)
chr5 (156-229)||(8943218-8943292)
chr5 (149-234)||(29440293-29440379)
chr5 (149-233)||(2802892-2802977)
chr5 (149-233)||(21250274-21250359)
[»] chr2 (15 HSPs)
chr2 (124-233)||(7438420-7438530)
chr2 (140-233)||(5482889-5482983)
chr2 (124-233)||(43671260-43671370)
chr2 (141-233)||(7881634-7881727)
chr2 (149-233)||(11974166-11974251)
chr2 (149-233)||(29683594-29683679)
chr2 (149-233)||(33616014-33616099)
chr2 (149-233)||(45638077-45638162)
chr2 (124-233)||(28582459-28582569)
chr2 (148-233)||(34334547-34334633)
chr2 (82-174)||(5483015-5483112)
chr2 (149-233)||(33615756-33615841)
chr2 (149-221)||(40343703-40343775)
chr2 (124-192)||(4603595-4603663)
chr2 (122-174)||(28182263-28182315)
[»] chr8 (26 HSPs)
chr8 (124-233)||(9779115-9779225)
chr8 (149-233)||(29276637-29276722)
chr8 (124-233)||(15891761-15891871)
chr8 (148-233)||(29457135-29457221)
chr8 (149-233)||(6121524-6121609)
chr8 (149-234)||(9117518-9117604)
chr8 (124-233)||(15315176-15315286)
chr8 (124-233)||(15495545-15495655)
chr8 (148-233)||(31826850-31826936)
chr8 (124-233)||(42691913-42692023)
chr8 (149-233)||(23404083-23404168)
chr8 (134-233)||(15891648-15891748)
chr8 (124-192)||(27702445-27702513)
chr8 (150-233)||(27702602-27702686)
chr8 (122-174)||(29218481-29218533)
chr8 (155-233)||(31827161-31827240)
chr8 (124-233)||(23275339-23275449)
chr8 (124-233)||(23403826-23403936)
chr8 (124-233)||(35435388-35435498)
chr8 (148-233)||(35435584-35435670)
chr8 (82-233)||(7080-7237)
chr8 (149-233)||(22444621-22444706)
chr8 (149-233)||(44728126-44728211)
chr8 (149-233)||(44728390-44728475)
chr8 (149-233)||(15315117-15315201)
chr8 (149-233)||(15495486-15495570)
[»] chr1 (20 HSPs)
chr1 (134-233)||(4965046-4965146)
chr1 (133-234)||(5739476-5739578)
chr1 (149-233)||(29987221-29987306)
chr1 (155-233)||(1102618-1102697)
chr1 (124-234)||(15615382-15615493)
chr1 (128-234)||(32712181-32712288)
chr1 (82-233)||(1102678-1102835)
chr1 (149-233)||(20491720-20491805)
chr1 (149-233)||(39834008-39834093)
chr1 (124-252)||(18088066-18088197)
chr1 (155-233)||(20492020-20492099)
chr1 (158-233)||(41810951-41811026)
chr1 (124-233)||(4765016-4765126)
chr1 (148-233)||(4765100-4765186)
chr1 (140-233)||(41810745-41810839)
chr1 (140-233)||(45721147-45721241)
chr1 (140-233)||(49113167-49113261)
chr1 (122-175)||(4975013-4975066)
chr1 (149-232)||(18030544-18030628)
chr1 (124-192)||(29987323-29987391)
[»] chr7 (17 HSPs)
chr7 (124-233)||(45443365-45443475)
chr7 (140-233)||(48840026-48840119)
chr7 (124-233)||(44941188-44941298)
chr7 (134-234)||(18808102-18808203)
chr7 (155-233)||(37042994-37043073)
chr7 (124-233)||(8919567-8919677)
chr7 (149-233)||(18942313-18942398)
chr7 (149-233)||(42430633-42430718)
chr7 (149-233)||(42759217-42759302)
chr7 (124-192)||(45203758-45203826)
chr7 (125-192)||(29036317-29036384)
chr7 (124-233)||(22563895-22564005)
chr7 (124-174)||(22642031-22642081)
chr7 (149-233)||(3173240-3173325)
chr7 (149-233)||(47193512-47193597)
chr7 (149-233)||(48840252-48840337)
chr7 (182-233)||(47332353-47332405)
[»] chr3 (15 HSPs)
chr3 (124-233)||(10820298-10820408)
chr3 (148-233)||(33623357-33623443)
chr3 (149-233)||(13712307-13712392)
chr3 (149-233)||(17579762-17579847)
chr3 (124-175)||(29230972-29231023)
chr3 (124-233)||(11871472-11871582)
chr3 (82-174)||(11218195-11218292)
chr3 (134-233)||(11218258-11218358)
chr3 (125-176)||(23232315-23232366)
chr3 (149-231)||(48517931-48518014)
chr3 (122-192)||(47220346-47220416)
chr3 (149-233)||(10820238-10820323)
chr3 (149-233)||(17580068-17580153)
chr3 (149-232)||(8112812-8112896)
chr3 (155-233)||(54924091-54924168)
[»] chr4 (22 HSPs)
chr4 (140-233)||(50523077-50523171)
chr4 (149-229)||(18598212-18598293)
chr4 (154-233)||(21956040-21956120)
chr4 (134-233)||(40998185-40998284)
chr4 (148-233)||(40998429-40998515)
chr4 (149-233)||(18598537-18598622)
chr4 (149-233)||(25154799-25154884)
chr4 (149-233)||(29031282-29031367)
chr4 (149-233)||(29043401-29043486)
chr4 (134-233)||(13846613-13846713)
chr4 (155-233)||(34979497-34979576)
chr4 (155-233)||(40998125-40998204)
chr4 (124-234)||(41898194-41898305)
chr4 (148-233)||(21956368-21956454)
chr4 (155-233)||(25363566-25363647)
chr4 (140-233)||(41898136-41898229)
chr4 (149-233)||(14966429-14966514)
chr4 (149-233)||(15631340-15631425)
chr4 (125-174)||(20421227-20421276)
chr4 (125-233)||(25154602-25154711)
chr4 (155-234)||(6112013-6112093)
chr4 (134-233)||(41898318-41898418)
[»] scaffold0062 (1 HSPs)
scaffold0062 (149-233)||(11733-11818)
[»] scaffold0182 (2 HSPs)
scaffold0182 (82-192)||(22311-22426)
scaffold0182 (155-234)||(22449-22529)
[»] scaffold0051 (1 HSPs)
scaffold0051 (155-233)||(60491-60570)
[»] chr6 (3 HSPs)
chr6 (155-233)||(24012518-24012597)
chr6 (125-192)||(33040915-33040982)
chr6 (146-233)||(33040998-33041086)
[»] scaffold0220 (1 HSPs)
scaffold0220 (134-233)||(21975-22075)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 293 - 378
Target Start/End: Complemental strand, 10223362 - 10223277
Alignment:
Q  293 cttactcagaatttcaatcttaaatttctaaagtcaaatttgatgcctaacacttctaaaatgttatacttttttctttaacctat 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  10223362 cttactcagaatttcaatcttaaatttctaaagtcaaatttgatgcctagcacttctaaaatgttttacttttttctttaacctat 10223277  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 10223731 - 10223667
Alignment:
Q  20 gtgtctgcgttgcggcggcgggtgggtggtgccggcggtgttggagcaacgatggcttccatttt 84  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  10223731 gtgtctgcgttgcggcggcgggtgggtggtgccggcggtggtggagcaacgatagcttccatttt 10223667  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 10223529 - 10223442
Alignment:
Q  173 aaaaatctgtctgaaaccttcgaac-ttaaaacacctatctaaaacaaacatgaaacttaaaatctatccaaaacaaactcgtaattt 259  Q
    |||||||| |||||||| ||||||  ||||| || ||||||||||||||||||||||||||||| ||||  ||||||||||| |||||    
T  10223529 aaaaatctatctgaaactttcgaaaattaaagcatctatctaaaacaaacatgaaacttaaaatttatctgaaacaaactcgaaattt 10223442  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 5361503 - 5361582
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||||||||| ||||| ||||||||||| | ||||||||  | |||||| ||||||||||| ||||||||    
T  5361503 aaacaaactcgaaatttaaagaatctatctgaaaccttagaaacttaaatgatctatctgaaacaaacatgcaacttaaa 5361582  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 6641938 - 6642095
Alignment:
Q  82 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 176  Q
    |||||||||||||| ||||| |||  | |||||||| |||||     |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||      
T  6641938 tttcgagtttatttcagataggtcctttctatcaacctccgttaagccaaagttgatttgatagaaaggaactatctgaaacaaactcgaaacttaaagg 6642037  T
Q  177 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    | || ||||||||||| | ||||||||  |||||||  ||||||||  ||||||||||    
T  6642038 acctatctgaaaccttagaaacttaaaggacctatccgaaacaaactcgaaacttaaa 6642095  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 6642070 - 6642155
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  ||||||||||||||||| || ||||||||    
T  6642070 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctaaaacaaacgtggaacttaaa 6642155  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 8942967 - 8942882
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||| | || | ||||||||| ||| ||||||  |||||| | ||||||||||||||||||||    
T  8942967 tatccgaaacaaactcgaaacttaaaagacctatatgaaaccttagaaacttaaaggacctatatgaaacaaacatgaaacttaaa 8942882  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 27496022 - 27496179
Alignment:
Q  82 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 176  Q
    |||||||||| ||||||||| |||  | |||||||| |||||     |||||||||||||||| ||| ||  ||||  |||||||||||||||||||| |    
T  27496022 tttcgagtttgttttagataggtcctttctatcaacctccgttaagccaaagttgatttgatagaaaggacctatctgaaacaaactcgaaatttaaaga 27496121  T
Q  177 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    | || ||| ||||||| | ||||||||  || ||||  ||||||||  ||||||||||    
T  27496122 acctatctcaaaccttagaaacttaaaggacatatccgaaacaaactcgaaacttaaa 27496179  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 30004184 - 30004075
Alignment:
Q  125 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacat 223  Q
    |||||||||| |||| ||||||| ||||  ||| ||| ||||||||||||  | || ||||||||||| | ||||||||| || ||||| ||||||||      
T  30004184 aaagttgattcgatagaaatgatctatctgaaataaattcgaaatttaaaggacctatctgaaaccttagaaacttaaaagacatatctgaaacaaactc 30004085  T
Q  224 gaaacttaaa 233  Q
    ||||||||||    
T  30004084 gaaacttaaa 30004075  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 42092228 - 42092313
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||  ||| |||||| | || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  42092228 tatccgaaacaaacttcaaacttaaaagacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 42092313  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 28574661 - 28574761
Alignment:
Q  134 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaa 232  Q
    |||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| ||| ||||||| | |||||| ||||||| |||||||||||    
T  28574661 ttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaagatctatctgaaacaaatatgaaacttaa 28574760  T
Q  233 a 233  Q
    |    
T  28574761 a 28574761  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 8943218 - 8943292
Alignment:
Q  156 aacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaact 229  Q
    ||||||||||||| ||||| || || ||||||||||| | ||||||||  | |||||| ||||||||||||||||    
T  8943218 aacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaact 8943292  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 29440293 - 29440379
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaaa 234  Q
    ||||| |||||||||| ||| ||||||||  | |||||||||||  || ||||||  | |||||||||||||| |||||||||||||    
T  29440293 tatccgaaacaaactccaaacttaaaaaacatatctgaaaccttaaaaacttaaaggatctatctaaaacaaatatgaaacttaaaa 29440379  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 2802977 - 2802892
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||| ||| |||||  | || ||| ||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  2802977 tatccgaaacaaactccaaacttaaaggacctatctaaaaccttagaaacttaaaagatctatctgaaacaaacatgaaacttaaa 2802892  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 21250359 - 21250274
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| ||||||||||||||  ||||  |||| ||||||||||| ||| ||| ||  |||||||| |||||||| |||||||||||    
T  21250359 tatccgaaacaaactcgaaacataaaggatctatctgaaaccttagaaactttaaggacctatctgaaacaaacctgaaacttaaa 21250274  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 7438420 - 7438530
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaaca 222  Q
    ||||||| |||||||| ||| ||| ||||  ||||||||||||||||||||  | || ||||||||||| ||| ||||||| |||||||||||||||||     
T  7438420 caaagtttatttgatagaaaggatctatctgaaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaagacctatctaaaacaaacg 7438519  T
Q  223 tgaaacttaaa 233  Q
    |||||||||||    
T  7438520 tgaaacttaaa 7438530  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 5482983 - 5482889
Alignment:
Q  140 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||| ||| ||||| |||||||||||||| |||||| | || ||||||||||| | ||||||||  | |||||| ||||||||||||||||||||    
T  5482983 taaaggatctatccgaaacaaactcgaaacttaaaacacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 5482889  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 43671370 - 43671260
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||| ||  ||||  ||||||||| |||| |||||| | || ||||||||||| | ||||||||| |||||||  ||||||||     
T  43671370 caaagttgatttgatagaaaggacctatctgaaacaaacttgaaacttaaaagacctatctgaaaccttagaaacttaaaagacctatccgaaacaaact 43671271  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  43671270 cgaaacttaaa 43671260  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 7881727 - 7881634
Alignment:
Q  141 aaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||| |||| |||||||||||||||| |||||  |||| ||||||||||| | || ||||||  ||||| | |||||||| |||||||||||    
T  7881727 aaatgacatattcaaaacaaactcgaaacttaaaggatctatctgaaaccttagaaatttaaaaggcctatttgaaacaaacgtgaaacttaaa 7881634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 11974166 - 11974251
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| ||||||||||||||||||||  || | |||||||||||   ||||||||| || ||||| |||||||| |||||||||||    
T  11974166 tatccgaaacaaactcgaaatttaaaggatttatctgaaaccttataaacttaaaagacatatctgaaacaaacgtgaaacttaaa 11974251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 29683679 - 29683594
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||| |||||||| ||||| |||||    
T  29683679 tatccaaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaagaacctatctgaaacaaacgtgaaatttaaa 29683594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 33616014 - 33616099
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||| ||| |||||  | || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  33616014 tatccgaaacaaactcaaaacttaaagtacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 33616099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 45638162 - 45638077
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  | || |||||||| || ||| ||||||  |||||||| ||||||||||||||||||||    
T  45638162 tatccgaaacaaactcgaaacttaaaggacctatctgaaacgttagaaacttaaaggacctatctgaaacaaacatgaaacttaaa 45638077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 28582569 - 28582459
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||| | | ||||||||  |||||||  ||||||||     
T  28582569 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccatagaaacttaaaggacctatccgaaacaaact 28582470  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  28582469 cgaaacttaaa 28582459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 34334633 - 34334547
Alignment:
Q  148 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  | |||||| ||||||||||||||||||||    
T  34334633 atatcccaaacaaactcgaaacttaaatgacctatctgaaaccttaaaaacttaaaggatctatctgaaacaaacatgaaacttaaa 34334547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 5483015 - 5483112
Alignment:
Q  82 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 174  Q
    |||||||||| ||| |||||||||| | |||||||| |||||     |||||||||||||||| ||||||  ||||  |||||||||| ||| |||||    
T  5483015 tttcgagtttgtttcagataagtcatttctatcaacctccgttaaaccaaagttgatttgatagaaatgacctatctgaaacaaactcaaaacttaaa 5483112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 33615841 - 33615756
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| ||||||||||||||||||||  |||| | ||||||||| | ||||||||  || ||||| ||| |||| |||||||||||    
T  33615841 tatccgaaacaaactcgaaatttaaaggatctatatgaaaccttagaaacttaaagaacttatctgaaataaacgtgaaacttaaa 33615756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 40343703 - 40343775
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaac 221  Q
    ||||| |||||||||||||| ||||| |  || ||||||||||| ||| |||||| ||||||||||||||||||    
T  40343703 tatccgaaacaaactcgaaacttaaagac-ctatctgaaaccttagaaacttaaagcacctatctaaaacaaac 40343775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 4603663 - 4603595
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 192  Q
    |||||||||||||||| ||||||  || |  |||||||||||||| ||||| || || |||||||||||    
T  4603663 caaagttgatttgatagaaatgacctaactgaaacaaactcgaaaattaaagaacctatctgaaacctt 4603595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 28182315 - 28182263
Alignment:
Q  122 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 174  Q
    |||||||||||||||||| ||||||   ||| ||||||||||||||| |||||    
T  28182315 gtcaaagttgatttgatagaaatgaccaatctaaaacaaactcgaaacttaaa 28182263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 9779115 - 9779225
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||| ||| ||||  |||||||||||||| |||||  | || |||||||||||  || ||||||  ||||||||||||||||||    
T  9779115 caaagttgatttgatagaaaggatctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggacctatctaaaacaaaca 9779214  T
Q  223 tgaaacttaaa 233  Q
    |||||||||||    
T  9779215 tgaaacttaaa 9779225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 29276722 - 29276637
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||||||||| ||||| || || ||||||||||| | ||||||||  |||||||| ||||||||||||||||||||    
T  29276722 tatccaaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacatgaaacttaaa 29276637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 15891761 - 15891871
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  |||| ||| ||||||| | ||||||||  |||||||| ||||||||     
T  15891761 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaaggatctatctaaaaccttagaaacttaaaggacctatctgaaacaaact 15891860  T
Q  223 tgaaacttaaa 233  Q
    | |||||||||    
T  15891861 tcaaacttaaa 15891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 29457221 - 29457135
Alignment:
Q  148 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||| |||||||||||||| ||||| || || ||||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||    
T  29457221 atatccgaaacaaactcgaaacttaaagaacctatctgaaatcttagaaacttaaaagacctatctgaaacaaacatgaaacttaaa 29457135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 6121609 - 6121524
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  6121609 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 6121524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 9117604 - 9117518
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaaa 234  Q
    |||||||||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| |||||||||||||||||||||    
T  9117604 tatccaaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaaa 9117518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 15315286 - 15315176
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||||||  ||||| ||| |||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  |||||||||    
T  15315286 caaagttgatttgatagaaatgacctatccgaaataaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaaca 15315187  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  15315186 cgaaacttaaa 15315176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 15495655 - 15495545
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||||||  ||||| ||| |||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  |||||||||    
T  15495655 caaagttgatttgatagaaatgacctatccgaaataaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaaca 15495556  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  15495555 cgaaacttaaa 15495545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 31826936 - 31826850
Alignment:
Q  148 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||||||| |||| |||||||||||    
T  31826936 atatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctaaaataaacgtgaaacttaaa 31826850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 42692023 - 42691913
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||| |||||  | || ||| ||||||| | ||||||||  | |||| ||||||| ||     
T  42692023 caaagttgatttgatagaaatgacctatctaaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatttaaaacagacg 42691924  T
Q  223 tgaaacttaaa 233  Q
    |||||||||||    
T  42691923 tgaaacttaaa 42691913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 23404083 - 23404168
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||||||||| ||  | ||||||||||| | ||||||||  | |||||| | ||||||||||||||||||    
T  23404083 tatccgaaacaaactcgaaatttaaagaacatatctgaaaccttagtaacttaaaggatctatctgagacaaacatgaaacttaaa 23404168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 15891748 - 15891648
Alignment:
Q  134 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 232  Q
    |||||| |||||| |||||  |||||||||||||| |||||  |||| ||| ||||||| | ||||||||  |||||||| |||||||| | ||||||||    
T  15891748 ttgataaaaatgacatatctgaaacaaactcgaaacttaaaggatctatctaaaaccttagaaacttaaaggacctatctgaaacaaacttcaaacttaa 15891649  T
Q  233 a 233  Q
    |    
T  15891648 a 15891648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 27702513 - 27702445
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 192  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  | || |||||||||||    
T  27702513 caaagttgatttgatagaaatgacatatcttaaacaaactcgaaacttaaaggacctatctgaaacctt 27702445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 27702602 - 27702686
Alignment:
Q  150 atccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  27702602 atccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggagctatctgaaacaaacatgaaacttaaa 27702686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 29218533 - 29218481
Alignment:
Q  122 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 174  Q
    |||||||||||||||||| ||||||| ||||  |||||||||||||| |||||    
T  29218533 gtcaaagttgatttgataaaaatgatctatctgaaacaaactcgaaacttaaa 29218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 31827161 - 31827240
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||| ||| |||||  | || ||||||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  31827161 aaacaaactcaaaacttaaaggacctatctgaaaccttagaaacttaaaaaatctatctgaaacaaacatgaaacttaaa 31827240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 23275339 - 23275449
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||| ||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  ||||||||     
T  23275339 caaagttgatttaatagaaatgacctatctgaaacaaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaact 23275438  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  23275439 cgaaacttaaa 23275449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 23403936 - 23403826
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  ||||||||     
T  23403936 caaagttgatttgatagaaaggacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatccgaaacaaact 23403837  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  23403836 cgaaacttaaa 23403826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 35435498 - 35435388
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||| | |||||| |||||||      
T  35435498 caaagttgatttgatagaaaggacttatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaagatctatctgaaacaaatt 35435399  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  35435398 cgaaacttaaa 35435388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 35435584 - 35435670
Alignment:
Q  148 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||| |||||||||||||| |||||  | || ||| ||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  35435584 atatccgaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 35435670  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 7080 - 7237
Alignment:
Q  82 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 176  Q
    |||||||||| ||| ||||| |||| | |||||||| |||||     ||||||||||||| || ||| ||  ||||  |||||||||||||| |||||      
T  7080 tttcgagtttgtttcagataggtcatttctatcaacctccgttaagccaaagttgatttggtagaaaggacctatctgaaacaaactcgaaacttaaagg 7179  T
Q  177 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    | || ||||||||||| | ||||||||  || |||| |||||||||  ||||||||||    
T  7180 acctatctgaaaccttagaaacttaaaggacatatccaaaacaaactcgaaacttaaa 7237  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 22444706 - 22444621
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| ||||| || || |||||||| || | ||||||||  |||||||  |||||||| |||||||||||    
T  22444706 tatccgaaacaaactcgaaacttaaagaacctatctgaaactttagaaacttaaaggacctatccgaaacaaacgtgaaacttaaa 22444621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 44728211 - 44728126
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| ||| ||||| |||| |||||  | |||||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  44728211 tatccgaaataaacttgaaacttaaaggacctgtctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 44728126  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 44728390 - 44728475
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||   ||||||||  || | ||| |||||||| |||||||||||    
T  44728390 tatccgaaacaaactcgaaacttaaagaatctatctgaaaccttaaaaacttaaaggacttgtctgaaacaaacgtgaaacttaaa 44728475  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 15315201 - 15315117
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||| ||||| |||||  |  | ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  15315201 tatccgaaacaaacacgaaacttaaaggacttatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 15315117  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 15495570 - 15495486
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||| ||||| |||||  |  | ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  15495570 tatccgaaacaaacacgaaacttaaaggacttatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 15495486  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 4965046 - 4965146
Alignment:
Q  134 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 232  Q
    |||||| ||||||| ||||  |||||||||| |||||||||| | || ||||||||||| | ||||||||  | ||||||||||||||||||||||||||    
T  4965046 ttgatagaaatgatctatctgaaacaaactcaaaatttaaaagacctatctgaaaccttagaaacttaaatgatctatctaaaacaaacatgaaacttaa 4965145  T
Q  233 a 233  Q
    |    
T  4965146 a 4965146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 5739476 - 5739578
Alignment:
Q  133 tttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaactta 231  Q
    ||||||| ||||||| ||||  |||||||||||||| ||||| || || ||||||||||| | ||||||||| | |||||| |||||||| |||||||||    
T  5739476 tttgatagaaatgatctatctgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagatctatctgaaacaaacgtgaaactta 5739575  T
Q  232 aaa 234  Q
    |||    
T  5739576 aaa 5739578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 29987306 - 29987221
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||   ||||||||  |||||||| |||||||| |||||||||||    
T  29987306 tatccgaaacaaactcgaaacttaaagaatctatctgaaaccttaaaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 29987221  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 1102697 - 1102618
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaac-acctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||| ||||| ||  ||||||||||||| ||| || |||  ||||||||||||||||||||||| |||||    
T  1102697 aaacaaactcgaaacttaaagaacatgtctgaaaccttagaaatttaaaggacctatctaaaacaaacatgaaatttaaa 1102618  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 15615382 - 15615493
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  |  | ||||||||||| | ||||||||  |||||||| ||||||||     
T  15615382 caaagttgatttgatagaaatgacttatctgaaacaaactcgaaacttaaaggacatatctgaaaccttagaaacttaaaggacctatctgaaacaaact 15615481  T
Q  223 tgaaacttaaaa 234  Q
     |||||||||||    
T  15615482 cgaaacttaaaa 15615493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 32712288 - 32712181
Alignment:
Q  128 gttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaa 226  Q
    |||||||| ||| ||| ||||||||| |||||||||||||| |||||  |  | ||||||| ||| | ||||||||  | |||||| |||||||||||||    
T  32712288 gttgatttaatagaaaagatatatccgaaacaaactcgaaacttaaaggacttatctgaaatcttagaaacttaaaggatctatctgaaacaaacatgaa 32712189  T
Q  227 acttaaaa 234  Q
    ||||||||    
T  32712188 acttaaaa 32712181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 1102835 - 1102678
Alignment:
Q  82 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 176  Q
    |||||||||| ||||||||| |||| | |||||||| |||||     |||||||||||||||| ||||||  ||||  ||| |||||||||| |||||      
T  1102835 tttcgagtttgttttagataggtcatttctatcaacctccgttaagtcaaagttgatttgatagaaatgacttatctgaaataaactcgaaacttaaagg 1102736  T
Q  177 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    | || ||||||| ||| | ||||||||   ||||||| ||||||||  ||||||||||    
T  1102735 acctatctgaaatcttagaaacttaaagggcctatctgaaacaaactcgaaacttaaa 1102678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 20491805 - 20491720
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  | || |||||||||||  || ||||||| | ||||| |||||||||||||||||||||    
T  20491805 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaagatctatccaaaacaaacatgaaacttaaa 20491720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 39834093 - 39834008
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||||||||| |||||  |  | ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  39834093 tatccaaaacaaactcgaaacttaaaggacttatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 39834008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 18088197 - 18088066
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  | |||||| ||||||||     
T  18088197 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaagtacctatctgaaaccttagaaacttaaaggatctatctgaaacaaact 18088098  T
Q  223 tgaaacttaaa--atctatccaaaacaaactc 252  Q
      |||||||||  |||||||  ||||||||||    
T  18088097 caaaacttaaaggatctatctgaaacaaactc 18088066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 20492020 - 20492099
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  20492020 aaacaaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 20492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 41810951 - 41811026
Alignment:
Q  158 caaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||||||  | || ||||||||||| |||  | ||| | |||||| ||||||||||||||||||||    
T  41810951 caaactcgaaatttaaaggacctatctgaaaccttagaaacttaaagatctatctgaaacaaacatgaaacttaaa 41811026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 4765016 - 4765126
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||| ||| ||||  |||||||||||||| ||||| || || ||||||| ||| | ||||||||  || ||||  ||||||||     
T  4765016 caaagttgatttgataaaaaggatttatctgaaacaaactcgaaacttaaagaacctatctgaaatcttagaaacttaaaggacatatccgaaacaaact 4765115  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  4765116 cgaaacttaaa 4765126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 4765100 - 4765186
Alignment:
Q  148 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||| |||||||||||||| ||||| || || | | ||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  4765100 atatccgaaacaaactcgaaacttaaagaacctatttaaaaccttagaaacttaaagaacctatctgaaacaaacgtgaaacttaaa 4765186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 41810839 - 41810745
Alignment:
Q  140 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||||| |||||| |||||||||  ||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  41810839 taaatgacatatccgaaacaaacttaaaacttaaaggacctatctgaaaccttagaaacttaaataacctatctgaaacaaacgtgaaacttaaa 41810745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 45721241 - 45721147
Alignment:
Q  140 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||| ||||| |||||| ||||||| |||||  |  | ||||||||||| ||| ||||||| | ||| || ||||||||||||||||||||    
T  45721241 taaatgatctatccgaaacaagctcgaaacttaaaggacatatctgaaaccttagaaacttaaaagatctacctgaaacaaacatgaaacttaaa 45721147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 49113167 - 49113261
Alignment:
Q  140 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||| ||| ||||| |||||||||||||| |||||  |  ||||||||||||| | ||||||||  | |||||| ||| ||||||||||||||||    
T  49113167 taaaggatctatccgaaacaaactcgaaacttaaaggacatgtctgaaaccttagaaacttaaaggatctatctgaaataaacatgaaacttaaa 49113261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 4975013 - 4975066
Alignment:
Q  122 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaa 175  Q
    |||||||||||||||||| |||||| |||||  ||||||||| |||| ||||||    
T  4975013 gtcaaagttgatttgatagaaatgacatatctgaaacaaacttgaaacttaaaa 4975066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 18030544 - 18030628
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 232  Q
    |||||||||||||||||||| ||||| ||| | ||||||||||| | || |||||  || ||||| ||||||| |||||| ||||    
T  18030544 tatccaaaacaaactcgaaacttaaataatatatctgaaaccttagaaatttaaaggacttatctgaaacaaatatgaaatttaa 18030628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 29987391 - 29987323
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 192  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || |||||||||||    
T  29987391 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaacctt 29987323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 45443365 - 45443475
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacct-tcgaacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||| |||||  | || ||||||||||    ||||||||  |||||||||||||||||     
T  45443365 caaagttgatttgatagaaatgacctatctaaaacaaactcgaaacttaaaggacctatctgaaacctcaaaaacttaaaggacctatctaaaacaaacg 45443464  T
Q  223 tgaaacttaaa 233  Q
    |||||||||||    
T  45443465 tgaaacttaaa 45443475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 48840119 - 48840026
Alignment:
Q  140 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||| ||| ||||| |||||||||| ||||||||| || || ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  48840119 taaaggatctatccgaaacaaactcaaaatttaaagaacctatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 48840026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 44941188 - 44941298
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| |||||  |  | ||||||| ||| | ||||||||  ||||||| |||||||||     
T  44941188 caaagttgatttgatagaaatgatatatctgaaacaaactcgaaacttaaaggacttatctgaaatcttagaaacttaaaggacctatccaaaacaaact 44941287  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  44941288 cgaaacttaaa 44941298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 18808102 - 18808203
Alignment:
Q  134 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaa 232  Q
    |||||| ||||||  ||||  ||||||||||||||||||||  |||| ||| ||||||| ||| | ||||  ||||||||||||||||| ||||||||||    
T  18808102 ttgatagaaatgacctatctgaaacaaactcgaaatttaaaggatctatctaaaaccttagaaacataaaggacctatctaaaacaaacgtgaaacttaa 18808201  T
Q  233 aa 234  Q
    ||    
T  18808202 aa 18808203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 37043073 - 37042994
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||| |||||  |||| ||||||||||| ||| |||||| || |||||  ||||||||||||||||||||    
T  37043073 aaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaagcatctatcctaaacaaacatgaaacttaaa 37042994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 8919677 - 8919567
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||||||  ||||  |||||||||| ||| |||||  | || |||||||||||   ||||||||| |||||||  ||||||||     
T  8919677 caaagttgatttgatagaaatgacctatctgaaacaaactcaaaacttaaaggacctatctgaaaccttaaaaacttaaaagacctatccgaaacaaact 8919578  T
Q  223 tgaaacttaaa 233  Q
    |||||||||||    
T  8919577 tgaaacttaaa 8919567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 18942398 - 18942313
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| ||||||||||||||||||||  | || ||||||||||  ||| ||||||  | |||||| ||||||||||||||||||||    
T  18942398 tatccgaaacaaactcgaaatttaaaggacctatctgaaacctcagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 18942313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 42430633 - 42430718
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  42430633 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 42430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 42759217 - 42759302
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| | ||||||||| |||||| | ||| |||| |||||||||||    
T  42759217 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagacctatatgaaataaacgtgaaacttaaa 42759302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 45203758 - 45203826
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 192  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  | || |||||||||||    
T  45203758 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaaggacctatctgaaacctt 45203826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 29036317 - 29036384
Alignment:
Q  125 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 192  Q
    ||||||||||||||| ||||||   |||| |||||||||||||| ||||| || || |||||||||||    
T  29036317 aaagttgatttgatagaaatgaccaatccgaaacaaactcgaaacttaaagaacctatctgaaacctt 29036384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 22563895 - 22564005
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||| || |||||  |||||||||||||| |||||  | || ||||||| ||| | ||||||||  |||||||  ||||||||     
T  22563895 caaagttgatttgatagaaaggacatatcggaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaggacctatccgaaacaaact 22563994  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  22563995 cgaaacttaaa 22564005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 22642031 - 22642081
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 174  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||    
T  22642031 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaa 22642081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 3173325 - 3173240
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  | |||||| ||||||||||||||||||||    
T  3173325 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggatctatctgaaacaaacatgaaacttaaa 3173240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 47193512 - 47193597
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| ||| |||||||||| |||||  | || ||| ||||||| ||| ||||||| | |||||||||||| ||||||||||||||    
T  47193512 tatccgaaataaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaagatctatctaaaacatacatgaaacttaaa 47193597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 48840252 - 48840337
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  | || | ||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  48840252 tatccgaaacaaactcgaaacttaaaggacctatttgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 48840337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 47332405 - 47332353
Alignment:
Q  182 tctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  47332405 tctgaaaccttagaaacttaaatgatctatctaaaacaaacatgaaacttaaa 47332353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 10820408 - 10820298
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| ||||| || || ||||||||||| | ||||||||| |||||||  ||||||||     
T  10820408 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagacctatccgaaacaaact 10820309  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  10820308 cgaaacttaaa 10820298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 33623357 - 33623443
Alignment:
Q  148 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||| |||||||||||||| |||||  |||| ||||||||||| | ||||||||  |||||||||||||| || |||||||||||    
T  33623357 atatccgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggacctatctaaaacagacgtgaaacttaaa 33623443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 13712307 - 13712392
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| | ||||||||  |||||||| |||||||| |||||||||||    
T  13712307 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 13712392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 17579847 - 17579762
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| ||||||||||||||||||||    
T  17579847 tatccgaaacaaactcgaaacttaaagcacctatctgaaaccttagaaacttaaagaacctatctgaaacaaacatgaaacttaaa 17579762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 29231023 - 29230972
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaa 175  Q
    |||||||||||||||| |||||| |||||  |||||||||||||||||||||    
T  29231023 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaatttaaaa 29230972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 11871582 - 11871472
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    ||||||||| |||||| ||||||  |||| ||||||||||||||| |||||| | || ||||||||||| | ||||||||  ||||||   ||||||||     
T  11871582 caaagttgacttgatagaaatgacctatctaaaacaaactcgaaacttaaaagacctatctgaaaccttagaaacttaaaggacctatacgaaacaaact 11871483  T
Q  223 tgaaacttaaa 233  Q
     ||||||||||    
T  11871482 cgaaacttaaa 11871472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 11218292 - 11218195
Alignment:
Q  82 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 174  Q
    |||||||||||||| ||||| |||| | ||||||||||||||     |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||    
T  11218292 tttcgagtttatttcagataggtcatttctatcaacatccgttaagccaaagttgatttgatagaaaggacctatctgaaacaaactcgaaacttaaa 11218195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 11218258 - 11218358
Alignment:
Q  134 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 232  Q
    |||||| ||||||  ||||  ||| ||||||||||||||||  |||| ||||||||||| | ||||||||  || ||||| |||||||| ||||||||||    
T  11218258 ttgatagaaatgacctatctgaaataaactcgaaatttaaaggatctatctgaaaccttagaaacttaaaggacttatctgaaacaaacttgaaacttaa 11218357  T
Q  233 a 233  Q
    |    
T  11218358 a 11218358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 23232366 - 23232315
Alignment:
Q  125 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 176  Q
    ||||||||||||||| ||| || |||||| |||||||||||||| |||||||    
T  23232366 aaagttgatttgatagaaaagacatatccgaaacaaactcgaaacttaaaaa 23232315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 48518014 - 48517931
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaactta 231  Q
    ||||| |||||||||||||| |||||  | || ||| ||||||| ||| ||||||  | |||||||||||||||||||||||||    
T  48518014 tatccgaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatctaaaacaaacatgaaactta 48517931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 47220416 - 47220346
Alignment:
Q  122 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 192  Q
    |||||||||||||||||| ||||||| |||   |||||||||||||| |||||| | || ||| |||||||    
T  47220416 gtcaaagttgatttgatagaaatgatctatgtgaaacaaactcgaaacttaaaagacctatctaaaacctt 47220346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 10820323 - 10820238
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| ||||| ||  | ||||||||||| | ||||||||  | |||||| |||||||| |||||||||||    
T  10820323 tatccgaaacaaactcgaaacttaaagaacatatctgaaaccttagaaacttaaaggatctatctgaaacaaacgtgaaacttaaa 10820238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 17580068 - 17580153
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| ||| |||||||||| ||||||||  | ||| ||||||| ||| ||||||| | ||||||||||||||||| ||| |||||    
T  17580068 tatccgaaataaactcgaaacttaaaaaacttatctaaaaccttagaaacttaaaaaatctatctaaaacaaacataaaatttaaa 17580153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 8112812 - 8112896
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaac-acctatctaaaacaaacatgaaacttaa 232  Q
    |||||||||||||||||||| || ||  |  | ||||||||||| ||| || |||  ||||||||||||||||| ||||||||||    
T  8112812 tatccaaaacaaactcgaaactttaaggacttatctgaaaccttagaaatttaaaggacctatctaaaacaaacgtgaaacttaa 8112896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 54924091 - 54924168
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||| ||||| || || ||||||||||| | ||||||||  |  |||||||||||||||| |||||||||    
T  54924091 aaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaa--aggtatctaaaacaaacataaaacttaaa 54924168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 50523171 - 50523077
Alignment:
Q  140 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||| ||| ||||| |||||||||||||| ||||| ||||| || |||||| | ||| ||||||  ||||||||||||||||| |||||||||||    
T  50523171 taaaggatctatccgaaacaaactcgaaacttaaagaatctatccgaaaccatagaaacttaaatgacctatctaaaacaaacgtgaaacttaaa 50523077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 18598293 - 18598212
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaact 229  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||| | ||||||||  |||||||| |||||||| |||||||    
T  18598293 tatccgaaacaaactcgaaatttaaatgatctatctgaaaccttagaaacttaaaggacctatctgaaacaaacttgaaact 18598212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 21956120 - 21956040
Alignment:
Q  154 aaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||||||||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  21956120 aaaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 21956040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 40998284 - 40998185
Alignment:
Q  134 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||| ||| || |||||  |||||||||||||| |||||  | || ||||||||||| |||||||||  |||||||| ||||||||  ||||||||||    
T  40998284 ttgatagaaaggacatatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaacttaaaggacctatctgaaacaaactcgaaacttaaa 40998185  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 40998429 - 40998515
Alignment:
Q  148 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||| |||||||||||||| ||||| || || |||||||||||   ||||||||  || |||||||||||||| |||||||||||    
T  40998429 atatccgaaacaaactcgaaacttaaagaacctatctgaaaccttataaacttaaagaacatatctaaaacaaacgtgaaacttaaa 40998515  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 18598537 - 18598622
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| |||| |  ||||||||||||||||| |||||||||||    
T  18598537 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttagaggacctatctaaaacaaacttgaaacttaaa 18598622  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 25154799 - 25154884
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||| ||  |||||  | |||||||||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  25154799 tatccgaaacaaactctaatcttaaaggacctgtctgaaaccttagaaacttaaaagatctatctgaaacaaacatgaaacttaaa 25154884  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 29031367 - 29031282
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  | || ||||||| ||| ||| ||||||| || |||||||||||||| |||||||||||    
T  29031367 tatccgaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaagacttatctaaaacaaacgtgaaacttaaa 29031282  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 29043486 - 29043401
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  | || ||||||| ||| ||| ||||||| || |||||||||||||| |||||||||||    
T  29043486 tatccgaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaagacttatctaaaacaaacgtgaaacttaaa 29043401  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 13846713 - 13846613
Alignment:
Q  134 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 232  Q
    |||||||||| ||  ||||  |||||||||||||| |||||| | || ||||||||||| | ||||||||  | |||||| ||||||||||||| |||||    
T  13846713 ttgatataaaggacctatctgaaacaaactcgaaacttaaaagacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaccttaa 13846614  T
Q  233 a 233  Q
    |    
T  13846613 a 13846613  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 34979576 - 34979497
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  34979576 aaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 34979497  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 40998204 - 40998125
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||| |||||  | || |||||||| || | ||||||||| | ||||||||||||||||||||| |||||    
T  40998204 aaacaaactcgaaacttaaaggacctatctgaaactttagtaacttaaaagatctatctaaaacaaacatgaaatttaaa 40998125  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 41898305 - 41898194
Alignment:
Q  124 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 222  Q
    ||||||| |||||||||||| ||  ||||  |||||||||||||| |||||  |||| ||||||||||| | ||||||||  | |||||  ||||||||     
T  41898305 caaagtttatttgatataaaagacctatctgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggatctatccgaaacaaact 41898206  T
Q  223 tgaaacttaaaa 234  Q
     |||||||||||    
T  41898205 cgaaacttaaaa 41898194  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 21956368 - 21956454
Alignment:
Q  148 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  |||||||  ||||||||||||||||||||    
T  21956368 atatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggacctatccgaaacaaacatgaaacttaaa 21956454  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 25363566 - 25363647
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaa--acacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||| |||||  |||| ||||||||||| ||| ||||||  | | |||||| ||||||||||||||||||||    
T  25363566 aaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggagatctatctgaaacaaacatgaaacttaaa 25363647  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 41898229 - 41898136
Alignment:
Q  140 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||| ||| ||||| |||||||||||||| || ||||| || ||||||||||| | ||||||||  ||| |||| |||||||| |||||||||||    
T  41898229 taaaggatctatccgaaacaaactcgaaactt-aaaaacctatctgaaaccttagaaacttaaaggacccatctgaaacaaacgtgaaacttaaa 41898136  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 14966429 - 14966514
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| ||||| || || ||| ||||||| ||| ||||||  | ||||||||||||||||| ||| |||||    
T  14966429 tatccgaaacaaactcgaaacttaaagaacctatctaaaaccttagaaccttaaacgatctatctaaaacaaacataaaatttaaa 14966514  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 15631425 - 15631340
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||||||| |||||  |||| ||||||||||| | || |||||  |||||||| ||| ||||| ||||||||||    
T  15631425 tatccgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaatttaaaggacctatctgaaataaacaggaaacttaaa 15631340  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 20421276 - 20421227
Alignment:
Q  125 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 174  Q
    ||||||||||||||| ||||||  ||||  ||||||||||||||||||||    
T  20421276 aaagttgatttgatagaaatgacctatctgaaacaaactcgaaatttaaa 20421227  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 25154711 - 25154602
Alignment:
Q  125 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacat 223  Q
    ||||||||||||||| ||||||  |||| |||||||||||||||  ||||  | || ||| ||||||| | ||||||||  || ||||| ||||||||      
T  25154711 aaagttgatttgatagaaatgacctatctaaaacaaactcgaaacctaaatgagctatcttaaaccttagaaacttaaaggacatatctgaaacaaactc 25154612  T
Q  224 gaaacttaaa 233  Q
    ||||||||||    
T  25154611 gaaacttaaa 25154602  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 6112013 - 6112093
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaaa 234  Q
    |||||||||||||| |||||  | || ||||||||||| | ||||||||| ||||||| |||||||||   ||||||||||    
T  6112013 aaacaaactcgaaacttaaacgacctatctgaaaccttagaaacttaaaagacctatccaaaacaaactccaaacttaaaa 6112093  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 41898318 - 41898418
Alignment:
Q  134 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 232  Q
    |||||| ||| || ||||| ||||||||||||||| |||||  |  | ||||||||||| | ||||||||  | |||||| |||||||| ||||||||||    
T  41898318 ttgatagaaaggacatatctaaaacaaactcgaaacttaaaggacatatctgaaaccttagaaacttaaatgatctatctgaaacaaacttgaaacttaa 41898417  T
Q  233 a 233  Q
    |    
T  41898418 a 41898418  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 11818 - 11733
Alignment:
Q  149 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||| |||||||||| ||| |||||  | || ||||||||||||||| ||||||  | |||||| ||||||||||||||||||||    
T  11818 tatccgaaacaaactccaaacttaaaggacctatctgaaaccttcgaaacttaaaggatctatctgaaacaaacatgaaacttaaa 11733  T

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Target: scaffold0182 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 22311 - 22426
Alignment:
Q  82 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 176  Q
    |||||||||| ||| |||||||||| | ||| |||| |||||     |||||||||||||||| ||||||  ||||  ||||||||||| || |||||||    
T  22311 tttcgagtttctttcagataagtcatttctaccaacctccgttaagccaaagttgatttgatagaaatgacctatctgaaacaaactcgtaacttaaaaa 22410  T
Q  177 atctgtctgaaacctt 192  Q
    |  | |||||||||||    
T  22411 acatatctgaaacctt 22426  T

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Target: scaffold0182; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 22449 - 22529
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaaa 234  Q
    |||||||||||||| ||||| ||||| |||||||| || | || |||||  |||||||| |||||||| | ||||||||||    
T  22449 aaacaaactcgaaacttaaagaatctatctgaaactttagaaatttaaaggacctatctgaaacaaacgttaaacttaaaa 22529  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 60570 - 60491
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  60570 aaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaagtacctatctgaaacaaacgtgaaacttaaa 60491  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 24012518 - 24012597
Alignment:
Q  155 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    ||||||||||||||||||||  | || ||||||||||| | ||||||||  | |||||| |||||||| |||||||||||    
T  24012518 aaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacgtgaaacttaaa 24012597  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 33040915 - 33040982
Alignment:
Q  125 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 192  Q
    ||||||||||| ||| ||||||| ||||  |||||||||||||| |||||| | || |||||||||||    
T  33040915 aaagttgattttatagaaatgatctatctgaaacaaactcgaaacttaaaagaactatctgaaacctt 33040982  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 33040998 - 33041086
Alignment:
Q  146 atatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 233  Q
    |||||||| |||||||||  ||| |||||  | || ||||||||||| | ||||||||  |||||||| |||||||| |||||||||||    
T  33040998 atatatccgaaacaaacttcaaacttaaaggacctatctgaaaccttacaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 33041086  T

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Target: scaffold0220 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 21975 - 22075
Alignment:
Q  134 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 232  Q
    |||||| ||| ||| ||||  ||||||||||||||||||||  |||| ||||||||||| | ||||||||  ||||||   ||||||||  |||||||||    
T  21975 ttgatagaaaggatctatctgaaacaaactcgaaatttaaaggatctatctgaaaccttagaaacttaaaggacctatacgaaacaaactcgaaacttaa 22074  T
Q  233 a 233  Q
    |    
T  22075 a 22075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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