View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_low_29 (Length: 291)
Name: NF2797_low_29
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 22042544 - 22042712
Alignment:
| Q |
1 |
atcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaattgcaattgtta-gaagaatgagaattcttgtaca |
99 |
Q |
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| T |
22042544 |
atcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaactgcaattgttaagaagaatgagaatgcttgtaca |
22042643 |
T |
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| Q |
100 |
ttttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttattcaattgca |
168 |
Q |
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| T |
22042644 |
ttttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttattcaattgca |
22042712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 22042756 - 22042820
Alignment:
| Q |
212 |
ataagattctatattcttctagaccagaaaacgaaatacttttggtccaaggatgatgtacaaac |
276 |
Q |
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| T |
22042756 |
ataagattctatgttcttctagaccagaaaacgaaatacttttggtccaaggatgaagtacaaac |
22042820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 2424872 - 2424704
Alignment:
| Q |
1 |
atcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaattgcaattgttag-aagaatgagaattcttgtaca |
99 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |
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| T |
2424872 |
atcttgtgtggaatattttcgccatgttcgcttgccagagtatatggaaaccattcgcaaggtaattgcaagtgttaacaagaatgagaatgcttgtacc |
2424773 |
T |
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| Q |
100 |
ttttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttattcaattgca |
168 |
Q |
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| T |
2424772 |
ttttttgtgaactccataccgtcttatggcgacttgacaaatgggccaggtatgatttattcaattgca |
2424704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 2424663 - 2424599
Alignment:
| Q |
212 |
ataagattctatattcttctagaccagaaaacgaaatacttttggtccaaggatgatgtacaaac |
276 |
Q |
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|||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||| |
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| T |
2424663 |
ataagattatatgttcttctagaccagaaaaccaaatacttttggtccaaggatgaagtgcaaac |
2424599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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