View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_low_33 (Length: 261)
Name: NF2797_low_33
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_33 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 37448138 - 37447886
Alignment:
| Q |
11 |
cagagaagaaacacattgtttggataaacaacttaattaagcgttataagcacc--acatttactacctatgtctctaaaataaaggaccctcttctatg |
108 |
Q |
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| T |
37448138 |
cagaaaagaaacgcattgtttggataaacaacttaattaagcgttataagcacctaacatttactacctatgtctctaaaataaaggaccctcttctatg |
37448039 |
T |
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| Q |
109 |
tctatatatgagtgatacatacagctcaacaattaacaacatgaacaataaaataaaaaagaattggtgtgatggaacataaacaaatgatataatgaat |
208 |
Q |
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| T |
37448038 |
tctatatatgagtgatacatacagctcaacaattaaaaacatgaacaataaaataaaaaagaattggtgtgatggaacataaacaaatgatataatgaat |
37447939 |
T |
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| Q |
209 |
aaaatcatcaccttttccaagttggtcatcatgtttgacagtgatgtcattgc |
261 |
Q |
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| T |
37447938 |
aaaatcatcaccttttccaagttggtcatcatgtttgacagtgatgtcattgc |
37447886 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 18852891 - 18852923
Alignment:
| Q |
21 |
acacattgtttggataaacaacttaattaagcg |
53 |
Q |
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| T |
18852891 |
acaccttgtttggataaacaacttaattaagcg |
18852923 |
T |
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