View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_low_4 (Length: 600)
Name: NF2797_low_4
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 17 - 595
Target Start/End: Complemental strand, 43152376 - 43151796
Alignment:
| Q |
17 |
aaaatttcactatgtaaaaacatattttcatattatatcatatccatcaggggagttctcatatgcaatccacaaattgtatgtgtacatggatatcaac |
116 |
Q |
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| T |
43152376 |
aaaatttcactatgtaaaaacacattttcatattatatcatatccatcggggaagttctcatatgcaatccacaaattgtatgtgtacatggatatcaac |
43152277 |
T |
|
| Q |
117 |
tatcaatacnnnnnnngattacaacatggttgtcagactcgcaggtcaactcatagacttctaggagcttacgggtctaggatgccaaaatgagttgacg |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43152276 |
tatcaatacaaaaaaagattacaacatggttgtcagactcgcaggtcaactcatagacttctaggagcttacgggtctaggatgccaaaatgagttgacg |
43152177 |
T |
|
| Q |
217 |
cgcactgatattcattttcattgtagactcggtcaaatcggatagactcacaagtctgatgcaagttcacgagttcaatgtaatttttgaagaaaaaaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43152176 |
cgcactgatattcattttcattgtagactcggtcaaatcggatagactcacaagtctgatgcaagctcacgagttcaatgtaatttttgaagaaaaaaca |
43152077 |
T |
|
| Q |
317 |
aaacatgttggatctcgtcgtttcactcaaaattaaaaaccctaaaagtaagttagaagacacgtccttttcgtttagaagttagaaaactcaaagaaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43152076 |
aaacatgttggatctcgtcgtttcactcaaaattaaaaaccctaaaagtaagttagaagacacgtccttttcgtttagaagttagaaaactcaaagaaaa |
43151977 |
T |
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| Q |
417 |
acatacatttctc--tgtcttgtgttcatgctacatgtttcttgttctttctggttcgctttgcacatttcttgtcgtttggcatttcaactagcacatc |
514 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43151976 |
acatacatttctctttgtctcgtgttcatgctacatgtttcttgttctttctggttcgctttgcacatttcttgtcgtttggcatttcaactagcacatc |
43151877 |
T |
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| Q |
515 |
tctctcatgtccgcacacacatgtctctcacatttgttcgtctctcggagaatcacatttgttcccttggtctgtgctgct |
595 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
43151876 |
tctctcatgtccgcacacacatgtctctcacatttgttcgtctctcggagaatcacatttgttcccttggtttgtgttgct |
43151796 |
T |
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