View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_low_40 (Length: 212)
Name: NF2797_low_40
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 47506897 - 47506723
Alignment:
| Q |
14 |
cacagacaccagcaaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatgaat |
113 |
Q |
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| T |
47506897 |
cacagacaccagcaaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatgaat |
47506798 |
T |
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| Q |
114 |
agcagcaagagaagagaaagggacagtcaaagcattgggatttgtgaatatcaaactctcttattataccataagat |
190 |
Q |
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| T |
47506797 |
agcagcaagagaagagaaagggacagtcaaagcattgggatttgtgaatatcaaa--ctcttattataccataagat |
47506723 |
T |
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