View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2797_low_5 (Length: 537)
Name: NF2797_low_5
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Original strand, 10279666 - 10280177
Alignment:
| Q |
18 |
aggaagaggacgaaaaagaaatagtcggtgttaaactatcgaaggatctcatgaatgttgctagggacgcacttcgtgtacacataacatcgctcggtcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10279666 |
aggaagaggacgaaaaagaaatagtcggtgttaaactatcgaaggatctcatgaatgttgctagggacgcacttcgtgtacacataacatcgctcggtcc |
10279765 |
T |
|
| Q |
118 |
attagtcctcccaatttcggaaaaactcaagtatgtgaaaaatttagttgagaggaagattttgaagaagaagatcgaaccatacatgccaaatttcaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10279766 |
attagtcctcccaatttcggaaaaactcaagtatgtgaaaaatttagttgagaggaagattttgaagaagaagatcgaaccatacatgccaaatttcaag |
10279865 |
T |
|
| Q |
218 |
ttagcgttcgatcaattttgcatgcatacgggcggtagagcagttcttgatcggatgcaaaagagtcttgagcttgatgattttcatatggagccttcaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10279866 |
ttagcgttcgatcaattttgcatgcatacgggcggtagagcagttcttgatcggatgcaaaagagtcttgagcttgatgattttcatatggagccttcaa |
10279965 |
T |
|
| Q |
318 |
gaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagggacataagat |
417 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10279966 |
gaatgacactatatagatatggtaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagggacataagat |
10280065 |
T |
|
| Q |
418 |
ttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcctaaatcattgaaaaatgcttggatggat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10280066 |
ttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcctaaatcattgaaaaatgcttggatggat |
10280165 |
T |
|
| Q |
518 |
gagattgatgat |
529 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10280166 |
gagattgatgat |
10280177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 308 - 490
Target Start/End: Complemental strand, 27776601 - 27776419
Alignment:
| Q |
308 |
gagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagg |
407 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || || ||| |||||||||||||||| ||| ||||||||||||||||||| || | | || | |
|
|
| T |
27776601 |
gagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaag |
27776502 |
T |
|
| Q |
408 |
gacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcct |
490 |
Q |
| |
|
| ||| |||||||||||| || ||||| ||||||||||| ||| ||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
27776501 |
gtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcct |
27776419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 295 - 489
Target Start/End: Complemental strand, 19742975 - 19742781
Alignment:
| Q |
295 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaagggg |
394 |
Q |
| |
|
||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||| ||| | |||||||||||||| || |
|
|
| T |
19742975 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaagga |
19742876 |
T |
|
| Q |
395 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
489 |
Q |
| |
|
||| | | ||| || ||| |||||||||||| || ||||| |||||||||||| ||| ||||||||||||| ||| || | |||||||||||| |
|
|
| T |
19742875 |
agaataagaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatcc |
19742781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 295 - 489
Target Start/End: Original strand, 19797113 - 19797307
Alignment:
| Q |
295 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaagggg |
394 |
Q |
| |
|
||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||| ||| | |||||||||||||| || |
|
|
| T |
19797113 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaagga |
19797212 |
T |
|
| Q |
395 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
489 |
Q |
| |
|
||| | | ||| || ||| |||||||||||| || ||||| |||||||||||| ||| ||||||||||||| ||| || | |||||||||||| |
|
|
| T |
19797213 |
agaataagaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatcc |
19797307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 295 - 489
Target Start/End: Complemental strand, 19539932 - 19539738
Alignment:
| Q |
295 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaagggg |
394 |
Q |
| |
|
||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| |||| |||||||||||| ||| | |||||||||||||| || |
|
|
| T |
19539932 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttttgtttggtatgagttggcatattgtgaagctaaagga |
19539833 |
T |
|
| Q |
395 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
489 |
Q |
| |
|
||| | | ||| || ||| |||||||||||| || ||||| ||| |||||||| ||| ||||||||||||| ||| || |||||||||||||| |
|
|
| T |
19539832 |
agaataagaaaaggtgataggatttggcaaattgcatttgggtctagatttaagtgtaacactgctgtttggtgtgcattaaagaatgttgatcc |
19539738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 295 - 489
Target Start/End: Complemental strand, 19671855 - 19671661
Alignment:
| Q |
295 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaagggg |
394 |
Q |
| |
|
||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||| ||| | |||||||||||||| || |
|
|
| T |
19671855 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaagga |
19671756 |
T |
|
| Q |
395 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
489 |
Q |
| |
|
||||| ||| || ||| |||||||||||| || ||||| |||||||||||| ||| ||| ||||||||| ||| || | |||||||||||| |
|
|
| T |
19671755 |
agagtatgaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactcctgtttggtgtgcattaaggaatgttgatcc |
19671661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 479
Target Start/End: Original strand, 15239601 - 15239718
Alignment:
| Q |
362 |
tggtatgaattgtcttattgtgaagctaaggggagagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctg |
461 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||| ||||||| || ||| | ||||||||| || ||||| ||||| |||||| ||||| ||||| |
|
|
| T |
15239601 |
tggtatgaattggcttatactgaagctaaagggaggattaaaaaaggtgatagaacttggcaaattgcatttggttctggttttaagtgtaatagtgctg |
15239700 |
T |
|
| Q |
462 |
tttggtatgctttgaaga |
479 |
Q |
| |
|
||||| | || ||||||| |
|
|
| T |
15239701 |
tttggaaagcattgaaga |
15239718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University