View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2797_low_6 (Length: 533)

Name: NF2797_low_6
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2797_low_6
NF2797_low_6
[»] chr5 (5 HSPs)
chr5 (178-522)||(38065058-38065403)
chr5 (20-178)||(38064710-38064868)
chr5 (136-174)||(3136463-3136501)
chr5 (136-177)||(3136005-3136046)
chr5 (137-177)||(39148851-39148891)
[»] chr7 (2 HSPs)
chr7 (20-178)||(8464468-8464626)
chr7 (137-178)||(84459-84500)
[»] chr8 (2 HSPs)
chr8 (137-178)||(43433892-43433933)
chr8 (136-177)||(2319343-2319384)
[»] chr3 (4 HSPs)
chr3 (136-177)||(34873047-34873088)
chr3 (136-177)||(1259631-1259672)
chr3 (136-177)||(37242919-37242960)
chr3 (137-177)||(41041218-41041258)
[»] chr4 (4 HSPs)
chr4 (137-177)||(52869530-52869570)
chr4 (137-179)||(52532597-52532639)
chr4 (136-177)||(16989312-16989353)
chr4 (137-178)||(52533365-52533406)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 178 - 522
Target Start/End: Original strand, 38065058 - 38065403
Alignment:
Q  178 tacccaagaatactgtaagtctgtaactacccctttttagtaagaaaagtaatgctagatcaatgtctaccattgtcaattactaggtgaaagaatactg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38065058 tacccaagaatactgtaagtctgtaactacccctttttagtaagaaaagtaatgctagatcaatgtctaccattgtcaattactaggtgaaagaatactg 38065157  T
Q  278 taaatacaacaatatacaatttctatcaaaagagatgaaaagaacgaattttc-tttaataaagaatttcatttattatccggagacttgttaaaatgcc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38065158 taaatacaacaatatacaatttctatcaaaagagatgaaaagaacgaattttcttttaataaagaatttcatttattatccggagacttgttaaaatgcc 38065257  T
Q  377 tatgaagaattgtcatcaaggtnnnnnnntaaataatatacttcaaaagtaaccaaaacaattataaacaatgatgattccagtggctgaggctgtgatc 476  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38065258 tatgaagaattgtcatcaaggtaaaaaaataaataatatacttcaaaagtaaccaaaacaattataaacaatgatgattccagtggctgaggctgtgatc 38065357  T
Q  477 atcaactctcctttattgttgaaagatcatcaaacactgttttcat 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38065358 atcaactctcctttattgttgaaagatcatcaaacactgttttcat 38065403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 38064710 - 38064868
Alignment:
Q  20 gcacagtggtgaagaatcaccaagaaaactgaagatgatgtttctctctcttcaattgccctcttttttctacttgtcagacaaccgtttgattaatcaa 119  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38064710 gcacactggtgaagaatcaccaagaaaactgaagatggtgtttctctctcctcaattgcccccttttttctacttgtcagacaaccgtttgattaatcaa 38064809  T
Q  120 aagcaggagagagaatgtgtaaaagaaataatacagtgttggaagtgtatgataagatt 178  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  38064810 aagcaggagagagaatgtgtaaaagaaataatatagtgttgggagtgtatgataagatt 38064868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 3136463 - 3136501
Alignment:
Q  136 gtgtaaaagaaataatacagtgttggaagtgtatgataa 174  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  3136463 gtgtaaaagaaataattcagtgttggaagtgtatgataa 3136501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 3136046 - 3136005
Alignment:
Q  136 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 177  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  3136046 gtgtaaaagaaataatccagtgttacaagtgtatgataagat 3136005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 39148891 - 39148851
Alignment:
Q  137 tgtaaaagaaataatacagtgttggaagtgtatgataagat 177  Q
    |||||||||||||||| ||||||| |||||||| |||||||    
T  39148891 tgtaaaagaaataatatagtgttgcaagtgtataataagat 39148851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 8464626 - 8464468
Alignment:
Q  20 gcacagtggtgaagaatcaccaagaaaactgaagatgatgtttctctctcttcaattgccctcttttttctacttgtcagacaaccgtttgattaatcaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  8464626 gcacagtggtgaagaatcaccaagaaaactgaagatgatgtttctctctcctcaattgcccccttttttctacttgtcaggcaaccgttggattaatcaa 8464527  T
Q  120 aagcaggagagagaatgtgtaaaagaaataatacagtgttggaagtgtatgataagatt 178  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  8464526 aagcaggagagataatgtgtaaaagaaataatatagtgttgggagtgtatgataagatt 8464468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 84500 - 84459
Alignment:
Q  137 tgtaaaagaaataatacagtgttggaagtgtatgataagatt 178  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  84500 tgtaaaagaaataatatagtgttgcaagtgtatgataagatt 84459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 43433933 - 43433892
Alignment:
Q  137 tgtaaaagaaataatacagtgttggaagtgtatgataagatt 178  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  43433933 tgtaaaagaaataatatagtgttggaagtctatgataagatt 43433892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 2319384 - 2319343
Alignment:
Q  136 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 177  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  2319384 gtgtaaaagaaataatccagtgttacaagtgtatgataagat 2319343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 34873088 - 34873047
Alignment:
Q  136 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 177  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  34873088 gtgtaaaagaaataatacagtgttacaagtgtatgataagat 34873047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 1259631 - 1259672
Alignment:
Q  136 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 177  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  1259631 gtgtaaaagaaataatccagtgttacaagtgtatgataagat 1259672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 37242919 - 37242960
Alignment:
Q  136 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 177  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  37242919 gtgtaaaagaaataatccagtgttacaagtgtatgataagat 37242960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 41041218 - 41041258
Alignment:
Q  137 tgtaaaagaaataatacagtgttggaagtgtatgataagat 177  Q
    |||||||||||||||| |||| || ||||||||||||||||    
T  41041218 tgtaaaagaaataatatagtgctgcaagtgtatgataagat 41041258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 52869570 - 52869530
Alignment:
Q  137 tgtaaaagaaataatacagtgttggaagtgtatgataagat 177  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  52869570 tgtaaaagaaataatatagtgttgcaagtgtatgataagat 52869530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 52532639 - 52532597
Alignment:
Q  137 tgtaaaagaaataatacagtgttggaagtgtatgataagatta 179  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||    
T  52532639 tgtaaaataaataattcagtgttggaagtctatgataagatta 52532597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 16989353 - 16989312
Alignment:
Q  136 gtgtaaaagaaataatacagtgttggaagtgtatgataagat 177  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  16989353 gtgtaaaagaaataattcagtgttacaagtgtatgataagat 16989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 52533365 - 52533406
Alignment:
Q  137 tgtaaaagaaataatacagtgttggaagtgtatgataagatt 178  Q
    ||||||| |||||||| |||||||||||| ||||||||||||    
T  52533365 tgtaaaaaaaataatatagtgttggaagtctatgataagatt 52533406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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