View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_low_8 (Length: 487)
Name: NF2797_low_8
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 47 - 471
Target Start/End: Complemental strand, 31227283 - 31226838
Alignment:
| Q |
47 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatttcaattcattcttttt |
146 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31227283 |
tagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgtttcgatttcaattcattcttttt |
31227184 |
T |
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| Q |
147 |
---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
231 |
Q |
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| T |
31227183 |
ctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
31227084 |
T |
|
| Q |
232 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgcttcagaatttgaagaagaatg |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31227083 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgcttcagaatttgaagaagaatg |
31226984 |
T |
|
| Q |
332 |
ttgcttctggaaaacttgttaaggtgaaaggttcattcaagctctcttcggcaacaaagccagctgct------aaggccaagccagccgctaagccaaa |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31226983 |
ttgcttctggaaaacttgttaaggtgaaaggttcattcaagctctcttcggcaacaaagccagctgctaaggtgaaggccaagccagccgctaagccaaa |
31226884 |
T |
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| Q |
426 |
ggcaaaagctgttgtcaagccaaagaccaaatctgttactgctaag |
471 |
Q |
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| T |
31226883 |
ggcaaaagctgttgtcaagccgaagaccaaatctgttactgctaag |
31226838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 47 - 471
Target Start/End: Original strand, 31173171 - 31173616
Alignment:
| Q |
47 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatttcaattcattcttttt |
146 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31173171 |
tagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgtttcgatttcaattcattcttttt |
31173270 |
T |
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| Q |
147 |
---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
231 |
Q |
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| T |
31173271 |
ctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
31173370 |
T |
|
| Q |
232 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgcttcagaatttgaagaagaatg |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31173371 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgcttcagaatttgaagaagaatg |
31173470 |
T |
|
| Q |
332 |
ttgcttctggaaaacttgttaaggtgaaaggttcattcaagctctcttcggcaacaaagccagctgct------aaggccaagccagccgctaagccaaa |
425 |
Q |
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| T |
31173471 |
ttgcttctggaaaacttgttaaggtgaaaggttcattcaagctctcttcggcaacaaagccagctgctaaggtgaaggccaagccagccgctaagccaaa |
31173570 |
T |
|
| Q |
426 |
ggcaaaagctgttgtcaagccaaagaccaaatctgttactgctaag |
471 |
Q |
| |
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||| ||||||||||||||||| | |||||||||||| ||||||||| |
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| T |
31173571 |
ggctaaagctgttgtcaagccgaggaccaaatctgtaactgctaag |
31173616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 190 - 383
Target Start/End: Complemental strand, 31232371 - 31232178
Alignment:
| Q |
190 |
cagatgattaaggatgcaattgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttcctt |
289 |
Q |
| |
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|||||||||||||||||||||||| | |||| ||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31232371 |
cagatgattaaggatgcaattgtgactttgaaagagagaactggttcaagtcaatttgcaattgcgaaattcattgaagagaaacacaaacagcttcctt |
31232272 |
T |
|
| Q |
290 |
caaatttcaagaagttattgcttcagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggttcattcaagctctcttcggc |
383 |
Q |
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|||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||| ||| |||| |
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| T |
31232271 |
caaatttcaagaagctattgcttcataatttgaagaagaacgttgcttctggaaagcttattaaggttaaaggttcattcaagctttctccggc |
31232178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 47 - 372
Target Start/End: Original strand, 32797854 - 32798203
Alignment:
| Q |
47 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatt-tcaattca------- |
138 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |
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| T |
32797854 |
tagcgaaggaatccaaacctaagaaagcttccaaaccacgaaaccctgcttctcatcctacttacgaagaggttcgtttcaattctcaattcactccttt |
32797953 |
T |
|
| Q |
139 |
----ttctt---tttgttacaaattatagtttcaattggatctaattt-----------gaacgaattgcagatgattaaggatgcaattgtgtcgctga |
220 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| || |||| |
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| T |
32797954 |
ctaattcttagttttgttacgaattatagtttcaattggatctaattttttattgatttgaacaatttgcagatgattaaggatgcaattgtatctctga |
32798053 |
T |
|
| Q |
221 |
aggagaggactggttcaagccaatacgcaattgcgaaattc-atcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgcttcagaatt |
319 |
Q |
| |
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|||| ||||| |||||||||||||| || ||||| |||||| || ||||||||||||||||||||||| |||||||||||||| |||||| |||||| || |
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| T |
32798054 |
aggataggacgggttcaagccaatatgcgattgcaaaattcaattgaagagaaacacaaacagcttccatcaaatttcaagaaattattgtttcagagtt |
32798153 |
T |
|
| Q |
320 |
tgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggttcattcaag |
372 |
Q |
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| T |
32798154 |
t---gaagaatgttgcttctggaaagctcgttaaggtgaaaggttcattcaag |
32798203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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