View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2797_low_9 (Length: 463)
Name: NF2797_low_9
Description: NF2797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2797_low_9 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 113 - 463
Target Start/End: Original strand, 30447651 - 30447998
Alignment:
| Q |
113 |
tatattgatcggcatatttttgccacgtcattaaaatatatccaagtaaaaatgaatagtcaacaaaagtatatgtcgact-cagctctaggtaagtgtg |
211 |
Q |
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| T |
30447651 |
tatattgatcagcataatttttcctcatccttaaaatatatccatgtaaaaatgaatagtcaacaaaagtatatgtcgacttcagctctaggtaagtg-- |
30447748 |
T |
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| Q |
212 |
atatggtgccctcaaagagtagttttaaaggaatgttaagtcgcaagggaggaattttttnnnnnnngaaccaagggactaaaatcaaaacttgccccaa |
311 |
Q |
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| T |
30447749 |
atatggtgccctcatagagtagttttaaaggaatgccaagtggcaagggaggaattttttaaaaaa-gaaccaacggactaaaatcaaaacttgccc-aa |
30447846 |
T |
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| Q |
312 |
atgtttaaacgcaataaggacaaaatcacatttaagttttaataatgagaattttcattaataaaatttaattcaatacatcgagtttatttgttactct |
411 |
Q |
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| T |
30447847 |
atatttaagcgcaaaaatgacaaaaacacattgaagttttaatactgagaatttttgttaagaaaatttaattcaatacatcgagtttatttgttagtct |
30447946 |
T |
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| Q |
412 |
tattccaaggaaagcaaatagggtcccctttttccggaattctacatggtcc |
463 |
Q |
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| T |
30447947 |
tattccaaggaaagcaaatagggtcccctttttccggagttctacatggtcc |
30447998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 30447547 - 30447587
Alignment:
| Q |
8 |
gagatgaatatggttgaagcgatgaagaagatcgaactcta |
48 |
Q |
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| T |
30447547 |
gagatgaatatggttgaagcgatgaagaagatcgaactcta |
30447587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 30459506 - 30459559
Alignment:
| Q |
410 |
cttattccaaggaaagcaaatagggtcccctttttccggaattctacatggtcc |
463 |
Q |
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| T |
30459506 |
cttatcccaatgaaagcaaatagggtccccatgttcctgaagtctacatggtcc |
30459559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 30458776 - 30458848
Alignment:
| Q |
113 |
tatattgatcggcatatttttgccacgtcattaaaatatatccaagtaaaaatgaatagtcaacaaaagtata |
185 |
Q |
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| T |
30458776 |
tatattaatcagcataattttgccacgtcattaaaacatatgcatgaggaaatggatagtcagcaaaagtata |
30458848 |
T |
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