View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2798_high_5 (Length: 301)
Name: NF2798_high_5
Description: NF2798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2798_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 39315282 - 39315453
Alignment:
| Q |
15 |
gaggttagcactgcaaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaatctttgataatgtttgcgatccacacccaaactaatg |
114 |
Q |
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| T |
39315282 |
gaggttagcactgcaaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaatctttgataatgtttgcgatccacacccaaactaatg |
39315381 |
T |
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| Q |
115 |
gccaatagctccataatcacctcagttaaatcattcattgcatcagagtacttttgatacaccaacctattc |
186 |
Q |
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| T |
39315382 |
gccaatagctccataatcacctcagttaaatcattcattgcatcagagtacttttgatacaccaacctattc |
39315453 |
T |
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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 44114037 - 44114186
Alignment:
| Q |
28 |
caaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaatctttgataatgtttgcgatccacacccaaactaatggccaatagctcca |
127 |
Q |
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| T |
44114037 |
caaggtggataatagttacatctcattattgagtcaccatcttcaaaaaatcttcgataatgcaaacgatctatccccaaactaatggccaagagctcca |
44114136 |
T |
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| Q |
128 |
taatcacctcagttaaatcattcattgcatcagagtacttttgatacacc |
177 |
Q |
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| T |
44114137 |
taatcactaaagataattctttcattgcttcacagtacttttgatacacc |
44114186 |
T |
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