View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2798_low_11 (Length: 240)
Name: NF2798_low_11
Description: NF2798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2798_low_11 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 52824234 - 52824040
Alignment:
| Q |
18 |
gatagtgtttatcaagtactcagatatagtaaaattaccagtttcttcatgaagagtgggaggaggagcaggagagtgcagcttgatcccacttagaaga |
117 |
Q |
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| T |
52824234 |
gatagtgtttatcaagtactcagatatagtaaaattaccagtttcttcatgaagagtgggaggaggagcaggagagtgcagcttgatcccacttagaaga |
52824135 |
T |
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| Q |
118 |
aacctattatgcttcttggtgtgttcgttgacaccatgaaccttcaaatcacactctttgcacacaatcgctctatcttcctgacaataaacaaa |
212 |
Q |
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| T |
52824134 |
aacctattatgcttcttggtgtgttcgttgacaccgtgaaccttcaaatcacactctttgcacacaatcgctctatcttcctgacaaaaaacaaa |
52824040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 34012203 - 34012241
Alignment:
| Q |
202 |
caataaacaaagaggaatgatacatagacaccctttatt |
240 |
Q |
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| T |
34012203 |
caataaaaaaagagtaatgatacatagacaccctttatt |
34012241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 33149545 - 33149583
Alignment:
| Q |
202 |
caataaacaaagaggaatgatacatagacaccctttatt |
240 |
Q |
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| T |
33149545 |
caataaaaaaagagtaatgatacatagacaccctttatt |
33149583 |
T |
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