View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2798_low_13 (Length: 227)
Name: NF2798_low_13
Description: NF2798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2798_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 10752150 - 10752336
Alignment:
| Q |
7 |
atatgaagtttcgtacaatgtttgtgatgatattattnnnnnnnnnncacaactaatgtatctactcactcactannnnnnnnaagcacaaacttggatg |
106 |
Q |
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| T |
10752150 |
atatgaagtttcggacaatgtttgtgctgatattattaaaaaaaa--cacaactaatgtatatactcactcactatttttttttagcacaaacttggatg |
10752247 |
T |
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| Q |
107 |
actcaccattattgaagaatccataataatgaatattagagaaataagacgatgtgatcgattaaagcttattcgttctttaaaaatga |
195 |
Q |
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| T |
10752248 |
actcgccattattgaagaatccataataatgaatattagagaaataagacgatgtgatcgattaaagcttattcgttctttaaaaatga |
10752336 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 15563055 - 15562975
Alignment:
| Q |
112 |
ccattattgaagaatccataataatgaatattagagaaataagacgatgtgat-cgattaaagcttattcgttctttaaaa |
191 |
Q |
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| T |
15563055 |
ccattattgaagaatctataataatgaatgttagagaaagaagacggtgggatacaaataaagcttaatcgttctttaaaa |
15562975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 2413558 - 2413639
Alignment:
| Q |
112 |
ccattattgaagaatccataataatgaatattagagaaataagacgatgtgat-cgattaaagcttattcgttctttaaaaa |
192 |
Q |
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| T |
2413558 |
ccattattgaagaatctataataatgaatgttagagaaagaagacagtgggatacaaataaagcttaatcattctttaaaaa |
2413639 |
T |
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