View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2798_low_4 (Length: 356)
Name: NF2798_low_4
Description: NF2798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2798_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 72 - 356
Target Start/End: Original strand, 12748595 - 12748879
Alignment:
| Q |
72 |
tattatttattagtaactaggcataagtatttatatacaaaactgtaacaaactttataacaaactagttatcttcggtttagttaaccaacaagtttac |
171 |
Q |
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| T |
12748595 |
tattatttattagtaactaggcataagtatttatatacaaaactgttacaaactttataacaaactagttatcttcggtttacttaaccaacaagtttac |
12748694 |
T |
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| Q |
172 |
ccttgtttttcctcaacttctaactaactgaaaatataaactctaactaactgaatttattaaactcgtaatacacctcctaattcattagttagaggtt |
271 |
Q |
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| T |
12748695 |
ccttgttttccctcaacttctaactaactcaaaatataaactctaactaactgaatttattaaactcctaatacacctcctaattcattatttagaggtt |
12748794 |
T |
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| Q |
272 |
ttaaccatttataacttgtttctcaagtattcaaagatgttagtcttcaaaggctttgttaagtaagtttgcaacttgctcctct |
356 |
Q |
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| T |
12748795 |
ttaaccatttataacttgtttctcaagtattcaaagttgttagtcttcaaaggctttggtaagtaagtttgcaacttgctcctct |
12748879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 12748176 - 12748237
Alignment:
| Q |
19 |
aacagaagaactgaaaaattaactttattaacttgagaatataatacttctcatattattta |
80 |
Q |
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| T |
12748176 |
aacagaagaactgaaaaataaactttattaacttgagaatataatacttcttatattattta |
12748237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 10992076 - 10991878
Alignment:
| Q |
39 |
aactttattaacttgagaatataatacttctcatattatttattagtaactaggcataagtatttatatac-aaaactgtaacaaactttataacaaact |
137 |
Q |
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| T |
10992076 |
aactttattgacttgagaatataatgcttctcatattattaatcagcaactaggcataggtatttatatacaaaaactgtaaaaaaaactattacaaact |
10991977 |
T |
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| Q |
138 |
agttatcttcggtttagttaaccaacaagtttacccttgtttttcctcaacttctaactaactgaaaatataaa--ctctaactaactgaatttattaaa |
235 |
Q |
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| T |
10991976 |
agttatcttaagtttacttaaccgacaagttaacccttgttttt-ctcgacttttaactaactcaaatgataaactctctaactaactgaatttattaaa |
10991878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 17342873 - 17342840
Alignment:
| Q |
240 |
taatacacctcctaattcattagttagaggtttt |
273 |
Q |
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| T |
17342873 |
taatacacctcctaattcattagttagaagtttt |
17342840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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