View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2798_low_5 (Length: 354)
Name: NF2798_low_5
Description: NF2798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2798_low_5 |
 | |
|
| [»] chr2 (12 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 30423901 - 30424254
Alignment:
| Q |
1 |
tcaaccctgcattccatttagaaaaattgaaggcaagtttccctcttcttgatatagaatccaattgtgtttatctaggccgcaacatataacttttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30423901 |
tcaaccctgcattccatttagaaaaattgaaggaaagtttccctttacttgatatagaatccaattgtgtttatctaggccgcaacatataacttttcaa |
30424000 |
T |
|
| Q |
101 |
gcatcacaattaggtttataagaaaacttgatttgaattcttaatgcacatgtgcttagtttaacacctctttgtctcttacaaacagatcatgttacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30424001 |
gcatcacaattaggtttataagaaaacatgatttgaattcttaatgcacatgtgcttagtttaacacctctttgtctcttacaaacagatcatgttacca |
30424100 |
T |
|
| Q |
201 |
atattcctcaaaagctgcgatgatctgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatggcctttccttcaaaatt |
300 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
30424101 |
atatacctcaaaagttgcgatgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggacgtatggcctttccttcaaaatt |
30424200 |
T |
|
| Q |
301 |
tcgccagcgatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
| || || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30424201 |
tggcgagtgatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
30424254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 30429934 - 30430287
Alignment:
| Q |
1 |
tcaaccctgcattccatttagaaaaattgaaggcaagtttccctcttcttgatatagaatccaattgtgtttatctaggccgcaacatataacttttcaa |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||| | || |||||||||||||||||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
30429934 |
tcaaccctgcattccatgtagaaaaattgaaggaaagtttccctttactagatatagaatccaattgtgtttatctagtccgcaacatataattgttcaa |
30430033 |
T |
|
| Q |
101 |
gcatcacaattaggtttataagaaaacttgatttgaattcttaatgcacatgtgcttagtttaacacctctttgtctcttacaaacagatcatgttacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30430034 |
gcatcacaattaggtttataagaaaacatgatttgaattcttaatgcacatgtgcttagtttaacacctctttgtctcttacaaacagatcatgttacca |
30430133 |
T |
|
| Q |
201 |
atattcctcaaaagctgcgatgatctgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatggcctttccttcaaaatt |
300 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
30430134 |
atatacctcaaaagatgcgatgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggaagtatggcctttccttcaaaatt |
30430233 |
T |
|
| Q |
301 |
tcgccagcgatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
| || || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30430234 |
tagcaagagatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
30430287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 30467895 - 30468247
Alignment:
| Q |
1 |
tcaaccctgcattccatttagaaaaattgaaggcaagtttccctcttcttgatatagaatccaattgtgtttatctaggccgcaacatataacttttcaa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| | | |||||||||||||| |||||||||||| | ||| ||||||||||||||| |
|
|
| T |
30467895 |
tcaatcctgcattccatttagaaaaattgaaggaaagtttccctttacaggatatagaatccaaatgtgtttatctattctgcagcatataacttttcaa |
30467994 |
T |
|
| Q |
101 |
gcatcacaa-ttaggtttataagaaaacttgatttgaattcttaatgcacatgtgcttagtttaacacctctttgtctcttacaaacagatcatgttacc |
199 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30467995 |
gcatcacaaattaggtttataagaaaacatgacttgaattcttaatgcatgtgcgcttaatttaacacctct--gtctcttacaaacagatcatgttacc |
30468092 |
T |
|
| Q |
200 |
aatattcctcaaaagctgcgatgatctgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatggcctttccttcaaaat |
299 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30468093 |
aatattccacaaaagttgcgatgatctgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaat |
30468192 |
T |
|
| Q |
300 |
ttcgccagcgatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
|| ||||| ||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
30468193 |
tttgccagtgatgttatttctcgagcagcgtttggaagtagttatgaagagggaa |
30468247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 162 - 354
Target Start/End: Original strand, 30436312 - 30436505
Alignment:
| Q |
162 |
taacacctctttgtctcttacaaa-cagatcatgttaccaatattcctcaaaagctgcgatgatctgattagcaaatgggagggaatgttggcttcagat |
260 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||||| | |||||| |
|
|
| T |
30436312 |
taacacctctttgtctcttacaaaacagatcatattaccaatattccacaaaagttgcgatgatttgattagcaaatgggagaaaatgttgtcgtcagat |
30436411 |
T |
|
| Q |
261 |
ggatcatgtgaaatggatgtatggcctttccttcaaaatttcgccagcgatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
30436412 |
ggatcatgtgaaatggacgtatggcctttccttcaaaatttggccagtgatcttatttctcgagcagcgtttggaagtagttatgaagagggaa |
30436505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 185 - 354
Target Start/End: Original strand, 30475207 - 30475376
Alignment:
| Q |
185 |
acagatcatgttaccaatattcctcaaaagctgcgatgatctgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatgg |
284 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| || |||||| |||||| |||||||||| |||||||| | |||||||||||||||||| ||||||| ||| |
|
|
| T |
30475207 |
acagatcatgttaccaattttcttcaaaagttgtgatgatttgattaccaaatgggagagaatgttgtcatcagatggatcatgtgaattggatgtttgg |
30475306 |
T |
|
| Q |
285 |
cctttccttcaaaatttcgccagcgatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
||||||||||||||||| || || |||||||||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
30475307 |
cctttccttcaaaatttggcgagtgatgttatttctagaacagcatttggaagtagttatgaagagggaa |
30475376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 185 - 354
Target Start/End: Original strand, 30482810 - 30482979
Alignment:
| Q |
185 |
acagatcatgttaccaatattcctcaaaagctgcgatgatctgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatgg |
284 |
Q |
| |
|
|||||| ||||||||||||||| | ||||| ||| ||||| ||||||||||||||||||||||||| | | |||||||||||||||||| ||||||||| |
|
|
| T |
30482810 |
acagatgatgttaccaatattctttaaaagttgcaatgatatgattagcaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatgg |
30482909 |
T |
|
| Q |
285 |
cctttccttcaaaatttcgccagcgatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
|||| | |||||||||| || || ||||||||| ||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
30482910 |
ccttccattcaaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaa |
30482979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 354
Target Start/End: Original strand, 30394077 - 30394211
Alignment:
| Q |
220 |
atgatctgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatggcctttccttcaaaatttcgccagcgatgttatttc |
319 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| || |||||||||| ||| || ||||| || || |||| |||||| |
|
|
| T |
30394077 |
atgatatgattagcaaatgggaggaaatgttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaatttggcaagtgatgctatttc |
30394176 |
T |
|
| Q |
320 |
tcgagctgcatttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
|||| |||| |||||||||||||||||||| |||| |
|
|
| T |
30394177 |
tcgaactgcgtttggaagtagttatgaagaaggaa |
30394211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 220 - 354
Target Start/End: Original strand, 30383948 - 30384082
Alignment:
| Q |
220 |
atgatctgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatggcctttccttcaaaatttcgccagcgatgttatttc |
319 |
Q |
| |
|
||||| |||||| |||||||||| ||||||| |||||||||||||||||||||| ||| ||||||||| ||| |||||||| || || |||| |||||| |
|
|
| T |
30383948 |
atgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatgctatttc |
30384047 |
T |
|
| Q |
320 |
tcgagctgcatttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
|||| | |||||||||||||| |||||||| |||| |
|
|
| T |
30384048 |
tcgaaccgcatttggaagtagctatgaagaaggaa |
30384082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 30436110 - 30436224
Alignment:
| Q |
6 |
cctgcattccatttagaaaaattgaaggcaagtttccctcttcttgatatagaatccaattgtgtttatctaggccgcaacatataacttttcaagcatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | || || |||||||||||||| |||||||| ||| |||||||| ||| |||||||| |
|
|
| T |
30436110 |
cctgcattccatttagaaaaattgaaggtaagtttccctttactacgtagagaatccaattgtgcttatctagtccgaaacatatagttttgcaagcatc |
30436209 |
T |
|
| Q |
106 |
acaa-ttaggtttat |
119 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
30436210 |
acaagttaggtttat |
30436224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 354
Target Start/End: Complemental strand, 8380263 - 8380094
Alignment:
| Q |
185 |
acagatcatgttaccaatattcctcaaaagctgcgatgatctgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatgg |
284 |
Q |
| |
|
|||||||||| ||||| ||||||| ||| ||| |||| ||||||||||||||||| || |||| | |||||||||||| ||||||| || ||||| |
|
|
| T |
8380263 |
acagatcatggcaccaagtttcctcacaagttgcattgatatgattagcaaatgggagtcaacgttgtcatcagatggatcaggtgaaatagacatatgg |
8380164 |
T |
|
| Q |
285 |
cctttccttcaaaatttcgccagcgatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
|||| ||| || ||||| | || ||||||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
8380163 |
ccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaa |
8380094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 354
Target Start/End: Complemental strand, 23784433 - 23784276
Alignment:
| Q |
197 |
accaatattcctcaaaagctgcgatgatctgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatggcctttccttcaa |
296 |
Q |
| |
|
||||| |||| | ||||||||| ||||| |||||||||| ||||| ||||||| ||||| ||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
23784433 |
accaacattcttgaaaagctgcaatgatttgattagcaattgggaaaaaatgttgtcttcaaatggatcatgtgaaatggacgtatggccttcccttcag |
23784334 |
T |
|
| Q |
297 |
aatttcgccagcgatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
| || | || |||||||| |||| | |||||||||||||||||||||| |||| |
|
|
| T |
23784333 |
agcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttatgaagaaggaa |
23784276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 30482190 - 30482228
Alignment:
| Q |
6 |
cctgcattccatttagaaaaattgaaggcaagtttccct |
44 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30482190 |
cctgcattccatttagaaaaattgaaggttagtttccct |
30482228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 228 - 354
Target Start/End: Complemental strand, 41628487 - 41628361
Alignment:
| Q |
228 |
attagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatggcctttccttcaaaatttcgccagcgatgttatttctcgagctg |
327 |
Q |
| |
|
||||| |||||||||| ||||||| || ||||||||||||||||||| ||| ||||||||| |||||| ||||| || || ||||||||||||||| | |
|
|
| T |
41628487 |
attagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagatatatggccttcccttcagaatttggcgagtgatgttatttctcgaacaa |
41628388 |
T |
|
| Q |
328 |
catttggaagtagttatgaagagggaa |
354 |
Q |
| |
|
|||| ||||||||||||||||| |||| |
|
|
| T |
41628387 |
cattcggaagtagttatgaagaaggaa |
41628361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 337
Target Start/End: Complemental strand, 15846229 - 15846118
Alignment:
| Q |
226 |
tgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatggcctttccttcaaaatttcgccagcgatgttatttctcgagc |
325 |
Q |
| |
|
|||| ||||||||| ||||| | ||| | ||||||||| ||||||| | ||||| |||||||||||||| ||||| || | ||||| |||||| || | |
|
|
| T |
15846229 |
tgataagcaaatggaagggattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaatttgacctgtgatgtaatttctagaac |
15846130 |
T |
|
| Q |
326 |
tgcatttggaag |
337 |
Q |
| |
|
||||||||||| |
|
|
| T |
15846129 |
agcatttggaag |
15846118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 337
Target Start/End: Complemental strand, 15860418 - 15860307
Alignment:
| Q |
226 |
tgattagcaaatgggagggaatgttggcttcagatggatcatgtgaaatggatgtatggcctttccttcaaaatttcgccagcgatgttatttctcgagc |
325 |
Q |
| |
|
|||| ||||||||| ||||| | ||| | ||||||||| ||||||| || ||||| ||||||| |||||| ||||| || | ||||| |||||||| | |
|
|
| T |
15860418 |
tgataagcaaatggaagggattattgtcatcagatggaacatgtgagattgatgtttggccttcccttcagaattttacctgtgatgtaatttctcggac |
15860319 |
T |
|
| Q |
326 |
tgcatttggaag |
337 |
Q |
| |
|
||||||||||| |
|
|
| T |
15860318 |
agcatttggaag |
15860307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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