View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2798_low_7 (Length: 285)
Name: NF2798_low_7
Description: NF2798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2798_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 12749020 - 12748901
Alignment:
| Q |
149 |
tgcagcttctatagtagcttttcaagaacaatggatcaacatgcttatgctagaaatgaagctagaagaagaagagaagatggtattactaattaatagc |
248 |
Q |
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| T |
12749020 |
tgcagcttctatagtagcttttcaagaacaatggatcaacatgcttatgctagaaatgaagctagaagaagaagagaagatggaattactaattgatagc |
12748921 |
T |
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| Q |
249 |
aggtctgttaatgaaaaact |
268 |
Q |
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| T |
12748920 |
aggtctgttaatgacaaact |
12748901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 27236736 - 27236836
Alignment:
| Q |
23 |
gagtggagacaaagatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgca |
122 |
Q |
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| T |
27236736 |
gagtggagataaagatcacagaaaaagcactgctgcttatgtgtttatgattgaaaatgcagccttttcatggagttctaagaaggaatcagtagttgca |
27236835 |
T |
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| Q |
123 |
c |
123 |
Q |
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| T |
27236836 |
c |
27236836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 53010601 - 53010769
Alignment:
| Q |
23 |
gagtggagacaaagatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgca |
122 |
Q |
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| T |
53010601 |
gagtggagataaagatgacaggaaaagcactgcggcttatgtgttcatgattggaaatgcagccttttcatggagttctaagaaggaataagtagttgca |
53010700 |
T |
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| Q |
123 |
cagtttttctgtgaaacttaatacattgcagcttctatagtagcttttcaagaacaatggatcaacatg |
191 |
Q |
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| T |
53010701 |
ctatcttcctgtgaagcagagtacattgcagcttccatgacagcatgtcaagctcaatggatcaacatg |
53010769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 56562683 - 56562783
Alignment:
| Q |
23 |
gagtggagacaaagatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgca |
122 |
Q |
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| T |
56562683 |
gagtggagataaagatgacaggaaaaacaatgctgcttatgtgttcatgattggaaatgcagccttttcatggagttctaagaaggaatcagtagttgca |
56562782 |
T |
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| Q |
123 |
c |
123 |
Q |
| |
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| T |
56562783 |
c |
56562783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 21081109 - 21081022
Alignment:
| Q |
23 |
gagtggagacaaagatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaa |
110 |
Q |
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| T |
21081109 |
gagtggagacaaagatgacaggaaatgcaccgtggcatatgtgtttaagtatggtaatgcagcggtatcatggagttctaagaaggaa |
21081022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 11352879 - 11352709
Alignment:
| Q |
21 |
tagagtggagacaaagatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttg |
120 |
Q |
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||||||||||| |||||||| ||||||| || ||||| ||||||| |||||||||||| ||||| ||||||||||| || |||||| | | |||| |
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| T |
11352879 |
tagagtggagataaagatgataggaaaagtagtgcagcatatgtgtacttgtatggaaatgttgcagtttcatggagttcaaataaggaatcaatggttg |
11352780 |
T |
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| Q |
121 |
cacagtttttctgtgaaacttaatacattgcagcttctatagtagcttttcaagaacaatggatcaacatg |
191 |
Q |
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| T |
11352779 |
cattatcttcttgtgaagctgagtacattgtagcttctatggcagcttgtcaagttcaatggattaacatg |
11352709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 9507099 - 9507198
Alignment:
| Q |
23 |
gagtggagacaaagatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgca |
122 |
Q |
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| T |
9507099 |
gagtggagataaagatggtaggaaaaacactgctgcttatgtgttcatgattggaaatgcagccttttcatggagttctaagaaggaatcagtagttgca |
9507198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 45486461 - 45486363
Alignment:
| Q |
24 |
agtggagacaaagatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgca |
122 |
Q |
| |
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|||||||| |||||||||||||||| | ||| | ||||||||| ||| |||||||||||| | ||||||||||||||||||||| | ||||||||| |
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| T |
45486461 |
agtggagataaagatgacaggaaaagcattgctgcttatgtgttcatgattggaaatgcagccttttcatggagttctaagaaggaatcagtagttgca |
45486363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 5988871 - 5989041
Alignment:
| Q |
23 |
gagtggagacaaagatgacaggaaaaatactgcagtttatgtgtttatgtatggaaatgcagcagtatcatggagttctaagaaggaaaccgtagttgca |
122 |
Q |
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||||||||| ||| |||||||||||| | || | ||||||||| ||| |||||||||||| | ||||||||||||||||||||| | ||||||||| |
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| T |
5988871 |
gagtggagataaatatgacaggaaaagcaatgttgcttatgtgttcatgattggaaatgcagccttttcatggagttctaagaaggaagcagtagttgca |
5988970 |
T |
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| Q |
123 |
cagtttttctgtgaaacttaatacattgcagcttctatagtagcttttcaagaacaatggatcaacatgct |
193 |
Q |
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| T |
5988971 |
ttatcttcctgtgaggcagagtacattgcagcttctatgacagcatgtcaagctcaatggatcaacatgct |
5989041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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