View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2799_low_1 (Length: 584)
Name: NF2799_low_1
Description: NF2799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2799_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 20 - 545
Target Start/End: Complemental strand, 41896463 - 41895938
Alignment:
| Q |
20 |
gatccgcctatgtaggtaagatggcaaaacttgagtcaaaactaatctatgttatcattaatattacatagcaaattttcagtagtagagtaagttatag |
119 |
Q |
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| T |
41896463 |
gatccgcctatgtaggtaagatggcaaaacttgagtcaaaactaatctatgttatcattaatattacatagcaaattttcagtagtagagtaagttatag |
41896364 |
T |
|
| Q |
120 |
aagtattatttaatttcttcatgaaaatcttgatgttgctacaatttgttgatatgtttcagcttttacattattatttggggtgagttttcctttcttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896363 |
aagtattatttaatttcttcatgaaaatcttgatgttgctacaatttgttgatatgtttcagcttttacattattatttggggtgagttttcctttcttt |
41896264 |
T |
|
| Q |
220 |
ggagatcttcttgggttctttggtggatttggttttgctcccacatcatattttgtaaggcactcttgtcctctcaatttctctatgcttatgtcaaatt |
319 |
Q |
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| T |
41896263 |
ggagatcttcttgggttctttggtggatttggttttgctcccacgtcatattttgtaaggcactcttgtcctctcaatttctctatgcttatgtcaaatt |
41896164 |
T |
|
| Q |
320 |
gtcaaatttttaaatgaattaattataaaatcaaaagatgaattattttcttgtgaattatttcagcttcctagtataatgtggttgataatcaagaagc |
419 |
Q |
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| T |
41896163 |
gtcaaatttttaaatgaattaattataaaatcaaaagatgaattattttcttgtgaattatttcagcttcctagtataatgtggttgataatcaagaagc |
41896064 |
T |
|
| Q |
420 |
caaggagattcagtatcaattggttcatcaattgggtaatgatcaattcacattagcaatttttctttaaaaaatgtaacaatctaaaatcagaatataa |
519 |
Q |
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| T |
41896063 |
caaggagattcagtatcaattggttcatcaattgggtaatgatcaattcacgttagcaatttttctttaaaaaatgtaacaatctaaaatcagaatataa |
41895964 |
T |
|
| Q |
520 |
tatatgtttctcttatatttgtcatt |
545 |
Q |
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| T |
41895963 |
tatatgtttctcttatatttgtcatt |
41895938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 164 - 461
Target Start/End: Complemental strand, 41890707 - 41890420
Alignment:
| Q |
164 |
tttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccac |
263 |
Q |
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|||||||| | |||||||||||||||||||| ||||| || | |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41890707 |
tttgttgaaacgtttcagcttttacattattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccac |
41890608 |
T |
|
| Q |
264 |
atcatattttgtaaggcactcttgtcctctcaatttctctatgcttatgtcaaattgtcaaatttttaaatgaattaattataaaatcaaaagatgaatt |
363 |
Q |
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|||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||| ||||||||| ||| | ||| |||| | |||| |
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| T |
41890607 |
ttcatattttgtaaggctctcttgtcc--------tctctattcttatgtcaaattgtcaa--tttaaaatgaattgattctgaaactaaaaagtcaatt |
41890518 |
T |
|
| Q |
364 |
attttcttgtgaattatttcagcttcctagtataatgtggttgataatcaagaagccaaggagattcagtatcaattggttcatcaattgggtaatga |
461 |
Q |
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||| ||||| |||| |||||||||||||| ||||||||| ||||||||||||| |||| || |||||| ||||| |||||||||||||||||||||| |
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| T |
41890517 |
attggcttgttaattgtttcagcttcctagcataatgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatcaattgggtaatga |
41890420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 22551861 - 22551979
Alignment:
| Q |
165 |
ttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccaca |
264 |
Q |
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||||| || |||| ||||||||||| | || ||||||| | || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22551861 |
ttgttaatttgttgcagcttttacactttttattggggttacattccctttctttggcgatcttcttggcttctttggtggatttggttttgctcccact |
22551960 |
T |
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| Q |
265 |
tcatattttgtaaggcact |
283 |
Q |
| |
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|||||||||||||| |||| |
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| T |
22551961 |
tcatattttgtaagccact |
22551979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 375 - 458
Target Start/End: Original strand, 22552070 - 22552153
Alignment:
| Q |
375 |
aattatttcagcttcctagtataatgtggttgataatcaagaagccaaggagattcagtatcaattggttcatcaattgggtaa |
458 |
Q |
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|||| |||||||||||||||||||||||| | ||||||||||| |||| |||||| || ||||| |||||||| |||||||||| |
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| T |
22552070 |
aattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattgggtaa |
22552153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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