View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2799_low_10 (Length: 276)

Name: NF2799_low_10
Description: NF2799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2799_low_10
NF2799_low_10
[»] scaffold0147 (1 HSPs)
scaffold0147 (1-276)||(398-674)
[»] chr4 (15 HSPs)
chr4 (1-276)||(3449617-3449893)
chr4 (1-84)||(4976024-4976107)
chr4 (7-84)||(11494809-11494886)
chr4 (1-82)||(44049356-44049437)
chr4 (1-84)||(17139862-17139946)
chr4 (1-84)||(21471160-21471244)
chr4 (1-81)||(4979661-4979738)
chr4 (7-77)||(4768916-4768986)
chr4 (35-84)||(9890289-9890338)
chr4 (21-84)||(3404077-3404140)
chr4 (21-84)||(49566208-49566271)
chr4 (159-212)||(955791-955844)
chr4 (35-84)||(13173524-13173573)
chr4 (1-77)||(38464507-38464584)
chr4 (17-84)||(51644230-51644298)
[»] chr8 (18 HSPs)
chr8 (1-147)||(7168211-7168357)
chr8 (1-84)||(18206042-18206125)
chr8 (1-84)||(39752756-39752839)
chr8 (1-84)||(2146689-2146772)
chr8 (7-84)||(43370044-43370121)
chr8 (7-84)||(45454664-45454741)
chr8 (7-84)||(22577929-22578007)
chr8 (7-64)||(35966502-35966559)
chr8 (163-216)||(41855363-41855416)
chr8 (164-216)||(42605260-42605312)
chr8 (142-180)||(39514-39553)
chr8 (21-84)||(8423566-8423629)
chr8 (21-84)||(30305302-30305365)
chr8 (21-84)||(32378654-32378717)
chr8 (21-84)||(32432609-32432672)
chr8 (143-180)||(1116192-1116230)
chr8 (22-84)||(20547048-20547110)
chr8 (159-216)||(41276881-41276938)
[»] chr6 (11 HSPs)
chr6 (1-84)||(7363048-7363131)
chr6 (1-84)||(7361420-7361503)
chr6 (1-84)||(2052361-2052444)
chr6 (1-84)||(31146633-31146716)
chr6 (7-83)||(28250147-28250223)
chr6 (1-64)||(23985756-23985819)
chr6 (7-84)||(13388449-13388526)
chr6 (1-84)||(26702075-26702159)
chr6 (39-84)||(18347311-18347356)
chr6 (21-89)||(1612475-1612543)
chr6 (1-45)||(18606303-18606347)
[»] scaffold0388 (1 HSPs)
scaffold0388 (1-84)||(11475-11558)
[»] scaffold0340 (1 HSPs)
scaffold0340 (1-84)||(913-996)
[»] chr2 (22 HSPs)
chr2 (1-84)||(19186954-19187037)
chr2 (1-84)||(43949976-43950059)
chr2 (1-83)||(24607311-24607393)
chr2 (7-84)||(41008659-41008736)
chr2 (7-83)||(9651433-9651509)
chr2 (1-82)||(435600-435681)
chr2 (1-82)||(34921504-34921585)
chr2 (22-83)||(41182952-41183013)
chr2 (142-216)||(12905544-12905618)
chr2 (7-84)||(1149725-1149802)
chr2 (7-110)||(12908131-12908235)
chr2 (1-110)||(45475671-45475781)
chr2 (7-84)||(1100810-1100887)
chr2 (142-215)||(45479798-45479871)
chr2 (35-84)||(24749933-24749982)
chr2 (21-84)||(213185-213248)
chr2 (21-84)||(5335138-5335201)
chr2 (21-84)||(10624198-10624261)
chr2 (7-77)||(27276115-27276185)
chr2 (35-84)||(7263310-7263359)
chr2 (142-178)||(39798416-39798453)
chr2 (35-83)||(3803301-3803349)
[»] scaffold0360 (1 HSPs)
scaffold0360 (1-84)||(7047-7130)
[»] chr3 (25 HSPs)
chr3 (1-84)||(6505707-6505790)
chr3 (1-110)||(29929688-29929795)
chr3 (1-110)||(29978842-29978949)
chr3 (1-83)||(7837853-7837935)
chr3 (7-84)||(7842746-7842823)
chr3 (7-84)||(13747453-13747530)
chr3 (142-189)||(66922-66969)
chr3 (1-83)||(9582754-9582836)
chr3 (7-64)||(14398796-14398853)
chr3 (35-84)||(23442865-23442914)
chr3 (163-216)||(45101873-45101926)
chr3 (1-77)||(46992971-46993046)
chr3 (7-83)||(48250602-48250678)
chr3 (21-84)||(6741140-6741203)
chr3 (21-84)||(9429580-9429643)
chr3 (18-65)||(21955955-21956002)
chr3 (21-84)||(30947386-30947449)
chr3 (142-180)||(50957669-50957708)
chr3 (39-84)||(8160728-8160773)
chr3 (35-84)||(16444889-16444938)
chr3 (163-216)||(46344932-46344985)
chr3 (159-216)||(52570587-52570644)
chr3 (157-214)||(53273223-53273279)
chr3 (159-195)||(9582563-9582599)
chr3 (159-215)||(52567759-52567815)
[»] chr7 (8 HSPs)
chr7 (1-77)||(47061185-47061261)
chr7 (163-216)||(30355264-30355317)
chr7 (142-176)||(10705309-10705343)
chr7 (1-49)||(47741995-47742043)
chr7 (21-84)||(45763657-45763720)
chr7 (35-84)||(15059896-15059945)
chr7 (21-82)||(30786802-30786863)
chr7 (142-178)||(40928930-40928967)
[»] scaffold0794 (1 HSPs)
scaffold0794 (22-83)||(5555-5616)
[»] scaffold0219 (1 HSPs)
scaffold0219 (7-84)||(15940-16017)
[»] chr1 (23 HSPs)
chr1 (7-110)||(13174101-13174205)
chr1 (1-77)||(21944116-21944192)
chr1 (1-84)||(8459831-8459914)
chr1 (7-82)||(36076295-36076370)
chr1 (1-108)||(4516265-4516373)
chr1 (1-84)||(19498845-19498927)
chr1 (1-79)||(22345517-22345595)
chr1 (7-84)||(37015156-37015233)
chr1 (7-64)||(50117527-50117584)
chr1 (7-77)||(23914094-23914164)
chr1 (7-84)||(29356425-29356502)
chr1 (21-84)||(3948195-3948258)
chr1 (1-110)||(7980846-7980957)
chr1 (21-84)||(20349708-20349771)
chr1 (21-84)||(38775859-38775922)
chr1 (143-180)||(30910007-30910045)
chr1 (142-176)||(36072430-36072464)
chr1 (38-84)||(44465852-44465898)
chr1 (35-84)||(6561910-6561959)
chr1 (35-84)||(13629685-13629734)
chr1 (35-84)||(22398086-22398135)
chr1 (142-214)||(29352256-29352329)
chr1 (163-216)||(36908573-36908626)
[»] chr5 (20 HSPs)
chr5 (1-84)||(31098666-31098749)
chr5 (1-84)||(33993537-33993620)
chr5 (1-83)||(4203943-4204025)
chr5 (1-84)||(28387526-28387609)
chr5 (1-84)||(27867579-27867662)
chr5 (7-64)||(30354149-30354205)
chr5 (7-84)||(34123653-34123730)
chr5 (7-84)||(13567834-13567911)
chr5 (7-84)||(25896815-25896892)
chr5 (7-83)||(7021618-7021694)
chr5 (7-84)||(34078030-34078107)
chr5 (1-76)||(18538071-18538147)
chr5 (21-84)||(37820614-37820677)
chr5 (142-178)||(1039782-1039819)
chr5 (142-178)||(11029067-11029104)
chr5 (35-84)||(11033195-11033244)
chr5 (163-216)||(17965844-17965897)
chr5 (163-216)||(18538360-18538413)
chr5 (142-178)||(38855774-38855811)
chr5 (35-84)||(38859934-38859983)
[»] scaffold0038 (1 HSPs)
scaffold0038 (7-83)||(50309-50385)
[»] scaffold0116 (1 HSPs)
scaffold0116 (7-82)||(11537-11612)
[»] scaffold0361 (1 HSPs)
scaffold0361 (7-84)||(4133-4210)
[»] scaffold0618 (1 HSPs)
scaffold0618 (163-216)||(3880-3933)
[»] scaffold0494 (2 HSPs)
scaffold0494 (35-84)||(1150-1199)
scaffold0494 (142-178)||(5304-5341)
[»] scaffold0341 (1 HSPs)
scaffold0341 (35-84)||(17100-17149)


Alignment Details
Target: scaffold0147 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 674 - 398
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcggaagtaaggcaccgaga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  674 ttgaaaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttgtcatgggaaacctcggaagtaaggcaccgaga 575  T
Q  101 aatacttgtgnnnnnnntttcacaccgaaaaaatgacagctactgtctgcataatcagttttctcggcagttaactgcagtcgattttggaatttttcaa 200  Q
    ||||||||||       ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||     
T  574 aatacttgtgaaaaaattttcacatcgaaaaaatgatagctactgtctgcataatcagttttcttggcagttaactgcagtcgattttggaatttctcat 475  T
Q  201 caattaactgccgaggnnnnnnncgtattttatttatgtatctcaac-cgtgtcaacaacaattttcataactttct 276  Q
    |  |||||||| ||||       |||||||||||||||||||||| |  |||| |||||||||||||||||||||||    
T  474 cggttaactgcagaggggaaaaacgtattttatttatgtatctcagcatgtgttaacaacaattttcataactttct 398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3449893 - 3449617
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcggaagtaaggcaccgaga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3449893 ttgaaaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttgtcatgggaaacctcggaagtaaggcaccgaga 3449794  T
Q  101 aatacttgtgnnnnnnntttcacaccgaaaaaatgacagctactgtctgcataatcagttttctcggcagttaactgcagtcgattttggaatttttcaa 200  Q
    ||||||||||       ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||     
T  3449793 aatacttgtgaaaaaattttcacatcgaaaaaatgatagctactgtctgcataatcagttttcttggcagttaactgcagtcgattttggaatttctcat 3449694  T
Q  201 caattaactgccgaggnnnnnnncgtattttatttatgtatctcaac-cgtgtcaacaacaattttcataactttct 276  Q
    |  |||||||| ||||       |||||||||||||||||||||| |  |||| |||||||||||||||||||||||    
T  3449693 cggttaactgcagaggggaaaaacgtattttatttatgtatctcagcatgtgttaacaacaattttcataactttct 3449617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4976024 - 4976107
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  4976024 ttgagcattttaatccgttcattttttggtttcgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 4976107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 11494809 - 11494886
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||||    
T  11494809 attttaatccgttcattttttggttttgttatgggtatctacgtcaattacatagaactctgtcatgggaaacctcgg 11494886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 44049356 - 44049437
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 82  Q
    ||||| ||||||||| ||| |||||||| |||||||| ||||||||||||||||||||||||||| |  |||||||||||||    
T  44049356 ttgagcattttaatccgttcattttttgattttgttacgggtatctacgtcagttacgtagaactctgccatgggaaacctc 44049437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 17139862 - 17139946
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||||||| |||||| | ||||||||||||| | |||||||| |||||||||||| | ||||||||| ||||||    
T  17139862 ttgagcattttaatcggttcatttttagcttttgttatgggtttttacgtcagtttacgtagaactctgtcatgggaatcctcgg 17139946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21471160 - 21471244
Alignment:
Q  1 ttgagaattttaatcggtttattttttg-gttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| |||||||  |||||||||||||| ||||| |||||||||||||||| | ||||||||| ||||||    
T  21471160 ttgagcattttaatccgttcattttttttgttttgttatgggtgtctacatcagttacgtagaactctgtcatgggaatcctcgg 21471244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 4979738 - 4979661
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacct 81  Q
    ||||| ||||||||| ||| |||||| ||||||||||||||||||||| ||||||  |||||||| | |||||||||||||    
T  4979738 ttgagcattttaatccgttcattttt-ggttttgttatgggtatctacatcagtt--gtagaactctgtcatgggaaacct 4979661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 4768916 - 4768986
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaa 77  Q
    ||||||||  ||| ||||||| |||||||||||| |||||  ||||||||||||||||| | |||||||||    
T  4768916 attttaattcgttcatttttttgttttgttatggatatctctgtcagttacgtagaactctgtcatgggaa 4768986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 9890289 - 9890338
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||| | ||||||||| ||||||    
T  9890289 ttatgggtatctacgtgagttacgtagaactctgtcatgggaatcctcgg 9890338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 3404077 - 3404140
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  3404077 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 3404140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 49566271 - 49566208
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  49566271 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 49566208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 955844 - 955791
Alignment:
Q  159 ttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgcc 212  Q
    |||||||||||||||||||||| ||||||| |||||  ||| || |||||||||    
T  955844 ttttctcggcagttaactgcagccgatttttgaattcctcagcagttaactgcc 955791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 13173524 - 13173573
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  13173524 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 13173573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38464584 - 38464507
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatgggaa 77  Q
    ||||| ||||||||  ||| ||||||||| |||||||||||| | |||||||| || ||||||||| | |||||||||    
T  38464584 ttgagcattttaattcgttcattttttggctttgttatgggtttttacgtcagtttgcgtagaactctgtcatgggaa 38464507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 51644298 - 51644230
Alignment:
Q  17 gtttattttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||||||| |||||||||||| | ||||| || |||| ||||||| | ||||||||| ||||||    
T  51644298 gtttattttttggctttgttatgggtttttacgttagtttacttagaactctgtcatgggaatcctcgg 51644230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 7168211 - 7168357
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcggaagtaaggcaccgaga 100  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||    
T  7168211 ttgagcattttaatcggtttattttttggttttgttatgagtatctacgtcagttacgtagaactctgtcatgggaaacctcggtagtaaggtaccgaga 7168310  T
Q  101 aatacttgtgnnnnnnntttcacaccgaaaaaatgacagctactgtc 147  Q
    || |||||||       ||||||| |||||||||| |||||||||||    
T  7168311 aaaacttgtgaaaaaattttcacaacgaaaaaatggcagctactgtc 7168357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 18206042 - 18206125
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  18206042 ttgagcattttaatccattcattttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 18206125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39752839 - 39752756
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  39752839 ttgagcattttaatccattcattttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 39752756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2146772 - 2146689
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||    
T  2146772 ttgagcattttaatccgttcattttttggttttgttatgggtatctatgtccgttacgtagaactctgtcatgggaaacctcgg 2146689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 43370044 - 43370121
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||| |||||||||||||| | |||||| |||| ||||    
T  43370044 attttaatccgttcattttttggttttgttatgagtatctacgttagttacgtagaactctgtcatggaaaacttcgg 43370121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 45454664 - 45454741
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||||| |||||||||| |||||||||||||||||||||  | ||||||||| ||||||    
T  45454664 attttattcgattgattttttggttatgttatgggtttctacgtcagttacgtagaaccctgtcatgggaatcctcgg 45454741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 22577929 - 22578007
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| ||| |||||| || |||||||||||| | |||||||| |||||||||||| ||||||||||| ||||||    
T  22577929 attttaatccgttcatttttaggctttgttatgggtttttacgtcagtttacgtagaactctatcatgggaatcctcgg 22578007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 35966559 - 35966502
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaac 64  Q
    |||||| ||| || ||||||||||| |||||||||| |||||||||||||||||||||    
T  35966559 attttattcgattgattttttggttatgttatgggtttctacgtcagttacgtagaac 35966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 41855416 - 41855363
Alignment:
Q  163 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    |||||||||||||||||| ||||||| ||||| ||| ||| |||||||||||||    
T  41855416 ctcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgagg 41855363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 42605260 - 42605312
Alignment:
Q  164 tcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    ||||||||||||||||| ||||||| ||||| ||| ||| |||||||||||||    
T  42605260 tcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgagg 42605312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 39553 - 39514
Alignment:
Q  142 actgtctgcataatcagtttt-ctcggcagttaactgcag 180  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  39553 actgtctgcataatcagttttcctcggcagttaactgcag 39514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 8423629 - 8423566
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  8423629 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 8423566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 30305365 - 30305302
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  30305365 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 30305302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 32378717 - 32378654
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  32378717 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 32378654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 32432672 - 32432609
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  32432672 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 32432609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 1116192 - 1116230
Alignment:
Q  143 ctgtctgcataatcagtttt-ctcggcagttaactgcag 180  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  1116192 ctgtctgcataatcagtttttctcggcagttaactgcag 1116230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 20547048 - 20547110
Alignment:
Q  22 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  20547048 ttttttgggtattttacgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 20547110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 41276881 - 41276938
Alignment:
Q  159 ttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    |||||||||||||||||||||| ||| |||  ||||  |||||| |||||||||||||    
T  41276881 ttttctcggcagttaactgcagccgaatttctaattcctcaacagttaactgccgagg 41276938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 7363131 - 7363048
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  7363131 ttgagcattttaatccgtttattttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 7363048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 7361420 - 7361503
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  7361420 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 7361503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2052444 - 2052361
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| |||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  2052444 ttgagcattttagtccgttcattttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 2052361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31146633 - 31146716
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||    
T  31146633 ttgagcattttaatccgttcattttttgagtttgttatgggtatctacgtcagttacgtagaactctgtcatgagaatcctcgg 31146716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 28250147 - 28250223
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    |||||| ||| || ||||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| |||||    
T  28250147 attttattcgattgattttttgggtgttttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcg 28250223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23985819 - 23985756
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaac 64  Q
    ||||| ||||||||| |||||||||| |  |||||||||||| || ||||||||||||||||||    
T  23985819 ttgagtattttaatccgtttatttttagcatttgttatgggtttcaacgtcagttacgtagaac 23985756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 13388526 - 13388449
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||| | | ||||||||| ||||||||||||||||||||  | ||||||||| ||||||    
T  13388526 attttattcgattgattttttgggtgttttatgggtaactacgtcagttacgtagaaccctgtcatgggaatcctcgg 13388449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 26702075 - 26702159
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtc-agttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| ||||||||| |||||||||||| | |||||| | |||||||||||| | |||||| || ||||||    
T  26702075 ttgagcattttaatctgttcattttttggctttgttatgggtttttacgtcaatttacgtagaactctgtcatggaaatcctcgg 26702159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 18347311 - 18347356
Alignment:
Q  39 gggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  18347311 gggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 18347356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 1612543 - 1612475
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcggaagta 89  Q
    ||||||||| | | ||| |||||||||||| |||||||||||||  | ||||||||| |||||| ||||    
T  1612543 attttttgggtgttttaggggtatctacgttagttacgtagaaccctgtcatgggaatcctcggcagta 1612475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18606303 - 18606347
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatc 45  Q
    ||||| ||||||||  ||| |||||||||||||||||||||||||    
T  18606303 ttgagcattttaatacgttcattttttggttttgttatgggtatc 18606347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11558 - 11475
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||||    
T  11558 ttgagcattttaatcggtttattttttggttttgttataggtatctacgtcagttacgtagaactctgtcatgggaatcctcgg 11475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 996 - 913
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  996 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19187037 - 19186954
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||    
T  19187037 ttgagcattttaatcggtttattttttggttttgttatgggtttctacgtcagttacgtagaaccctatcatgggaatcctcgg 19186954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 43950059 - 43949976
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||    
T  43950059 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgttagttacgtagaactctgtcatgggaaacctcgg 43949976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 24607393 - 24607311
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||    
T  24607393 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaatcctcg 24607311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 41008736 - 41008659
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||    
T  41008736 attttaatctgttcattttttggttttgttatgggtatctatgtcagttacgtagaactctgtcatgggaaacctcgg 41008659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 9651433 - 9651509
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  9651433 attttaatccgttcattttttggttttgttatgggtaactacgtcagttacgtagaactctgtcatgggaaacctcg 9651509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 435600 - 435681
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 82  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||    
T  435600 ttgagcattttaatccgttcattttttggttttgttatgggtatttacgtcacttacgtagaactctgtcatgggaaacctc 435681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 34921585 - 34921504
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 82  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||    
T  34921585 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgtaggactctgtcatgggaatcctc 34921504  T

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Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 41183013 - 41182952
Alignment:
Q  22 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  41183013 ttttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcg 41182952  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 12905618 - 12905544
Alignment:
Q  142 actgtctgcataatcagttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||  ||||| ||  || |||||||||||||    
T  12905618 actgtctgcataaccagttttctcggcagttaactgcagccgatttttcaatttctcggcagttaactgccgagg 12905544  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 1149725 - 1149802
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||||| |||||||||| |||||||||||||||||||||  | ||||||||| ||||||    
T  1149725 attttattcgattgattttttggttatgttatgggtttctacgtcagttacgtagaaccctgtcatgggaatcctcgg 1149802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 12908235 - 12908131
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagtt-acgtagaactttatcatgggaaacctcggaagtaaggcaccgagaaatac 105  Q
    ||||||||| ||| ||||||||  |||||||||||| | ||||| |||| |||||||||| | ||||||||| |||||| ||||||| | |||||||||     
T  12908235 attttaatccgttcattttttgactttgttatgggtttttacgttagtttacgtagaactctgtcatgggaatcctcggtagtaaggtatcgagaaatat 12908136  T
Q  106 ttgtg 110  Q
    |||||    
T  12908135 ttgtg 12908131  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 45475671 - 45475781
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagtt-acgtagaactttatcatgggaaacctcggaagtaaggcaccgag 99  Q
    ||||| ||||||||| ||| |||||||   || ||||||||| | |||||||||| |||||||| | | |||||||||||||||| ||||||| || |||    
T  45475671 ttgagcattttaatccgttcatttttttccttcgttatgggtttttacgtcagtttacgtagaattctgtcatgggaaacctcggtagtaaggtactgag 45475770  T
Q  100 aaatacttgtg 110  Q
     ||||||||||    
T  45475771 gaatacttgtg 45475781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 1100887 - 1100810
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||| | |||||||||| |||||||||||||||||||||| | |||||| || ||||||    
T  1100887 attttattcgattgattttttggatatgttatgggtttctacgtcagttacgtagaactctgtcatggaaatcctcgg 1100810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 45479798 - 45479871
Alignment:
Q  142 actgtctgcataatcagttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgag 215  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||||  ||||| ||  || ||||||||||||    
T  45479798 actgtctgcataatcaattttctcggcaattaactacagtcgattttttaatttctcggcagttaactgccgag 45479871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 24749933 - 24749982
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  24749933 ttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 24749982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 213248 - 213185
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  213248 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 213185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 5335138 - 5335201
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  5335138 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 5335201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 10624261 - 10624198
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  10624261 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 10624198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 27276185 - 27276115
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaa 77  Q
    |||||| ||| || ||||||||| | | |||||||||||||||||| |||||||||||  | |||||||||    
T  27276185 attttattcgattgattttttggctattttatgggtatctacgtcaattacgtagaaccctgtcatgggaa 27276115  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 7263310 - 7263359
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  7263310 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 7263359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 39798416 - 39798453
Alignment:
Q  142 actgtctgcataatcagtttt-ctcggcagttaactgc 178  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  39798416 actgtctgcataatcagttttcctcggcagttaactgc 39798453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 3803349 - 3803301
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    |||||||||||||||| |||||||||||||  | ||||||||| |||||    
T  3803349 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcg 3803301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 7130 - 7047
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||    
T  7130 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaatcctcgg 7047  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 6505790 - 6505707
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  6505790 ttgagcattttaatccgttcattttttgattttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 6505707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29929688 - 29929795
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcggaagtaaggcaccgaga 100  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||  |||  | ||||||||| |||||| ||||||| ||||||     
T  29929688 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgt--aacactgtcatgggaatcctcggtagtaaggtaccgagg 29929785  T
Q  101 aatacttgtg 110  Q
    ||||||||||    
T  29929786 aatacttgtg 29929795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29978842 - 29978949
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcggaagtaaggcaccgaga 100  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||  |||  | ||||||||| |||||| ||||||| ||||||     
T  29978842 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgt--aacactgtcatgggaatcctcggtagtaaggtaccgagg 29978939  T
Q  101 aatacttgtg 110  Q
    ||||||||||    
T  29978940 aatacttgtg 29978949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7837853 - 7837935
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    ||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  7837853 ttgagcattttaatccgttcattttttagttttgttatgggtatctacgtcagttacgtagtactctgtcatgggaaacctcg 7837935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 7842823 - 7842746
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||| | |||||||||| |||||||||||||||||||||  ||||||||||| ||||||    
T  7842823 attttattcgattgattttttggctatgttatgggtttctacgtcagttacgtagaaccctatcatgggaatcctcgg 7842746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 13747530 - 13747453
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  13747530 attttattcgattgattttttgggtgttttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 13747453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 66969 - 66922
Alignment:
Q  142 actgtctgcataatcagttttctcggcagttaactgcagtcgattttg 189  Q
    |||||||||||||||||||||||||| |||||||||||| || |||||    
T  66969 actgtctgcataatcagttttctcggtagttaactgcagccggttttg 66922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 9582754 - 9582836
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    ||||| ||||||||||||| || ||| | ||||||||||||| | ||||||| ||||||| |||| | ||||||||| |||||    
T  9582754 ttgagcattttaatcggttgatatttagcttttgttatgggtttttacgtcaattacgtataactctgtcatgggaatcctcg 9582836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 14398796 - 14398853
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaac 64  Q
    |||||| ||| || ||||||||| | | ||||||||||||||||||||||||||||||    
T  14398796 attttattcgattgattttttggctattttatgggtatctacgtcagttacgtagaac 14398853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 23442914 - 23442865
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||||||||||||||||| |||||| || ||||||||| ||||||    
T  23442914 ttatgggtatctacgtcagttacatagaaccttgtcatgggaatcctcgg 23442865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 45101873 - 45101926
Alignment:
Q  163 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    |||||||||||||||||| || |||| |||||  ||||||||||||||||||||    
T  45101873 ctcggcagttaactgcagccggtttttgaattcctcaacaattaactgccgagg 45101926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46993046 - 46992971
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaa 77  Q
    ||||| ||||||||| ||| ||||||||||||| |||||||||||||| ||| |||| ||||||  | |||||||||    
T  46993046 ttgagcattttaatccgttcattttttggtttt-ttatgggtatctacatcaattacatagaacactgtcatgggaa 46992971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 48250678 - 48250602
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    |||||| ||| || ||||||||| | | |||||||| |||||||||||||||||||||  | ||||||||| |||||    
T  48250678 attttattcgattgattttttgggtattttatgggtttctacgtcagttacgtagaaccctgtcatgggaatcctcg 48250602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 6741140 - 6741203
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  6741140 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 6741203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 9429643 - 9429580
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  9429643 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 9429580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 21956002 - 21955955
Alignment:
Q  18 tttattttttggttttgttatgggtatctacgtcagttacgtagaact 65  Q
    ||||||||||||||||  ||||||||||||| | ||||||||||||||    
T  21956002 tttattttttggtttttgtatgggtatctacctgagttacgtagaact 21955955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 30947449 - 30947386
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  30947449 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 30947386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 50957669 - 50957708
Alignment:
Q  142 actgtctgcataatcagtttt-ctcggcagttaactgcag 180  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  50957669 actgtctgcataatcagttttcctcggcagttaactgcag 50957708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 8160773 - 8160728
Alignment:
Q  39 gggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  8160773 gggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 8160728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 16444889 - 16444938
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  16444889 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 16444938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 46344985 - 46344932
Alignment:
Q  163 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    |||||||||||||||||| ||||||| |||||  || ||| |||||||||||||    
T  46344985 ctcggcagttaactgcagccgatttttgaattcctcgacagttaactgccgagg 46344932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 52570587 - 52570644
Alignment:
Q  159 ttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    ||||||||| ||||||||||||||| |||| ||||| |||  || |||||||||||||    
T  52570587 ttttctcggtagttaactgcagtcggtttttgaattcttcggcagttaactgccgagg 52570644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 53273223 - 53273279
Alignment:
Q  157 agttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccga 214  Q
    ||||| ||||||||||||||||||||| ||||  |||||||  |||||||||||||||    
T  53273223 agtttcctcggcagttaactgcagtcggtttt-aaattttttgacaattaactgccga 53273279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 9582599 - 9582563
Alignment:
Q  159 ttttctcggcagttaactgcagtcgattttggaattt 195  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  9582599 ttttctcggcagttaactgcagtcggtttttgaattt 9582563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 52567815 - 52567759
Alignment:
Q  159 ttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgag 215  Q
    |||||||||||||||| ||||| ||||||| ||||| |||  || ||||||||||||    
T  52567815 ttttctcggcagttaagtgcagccgatttttgaattattcggcagttaactgccgag 52567759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 47061185 - 47061261
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaa 77  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  47061185 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaa 47061261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 30355264 - 30355317
Alignment:
Q  163 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    |||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||    
T  30355264 ctcggcagttaactgcagccgatttttgaattcttcagcaattaactgccgagg 30355317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 10705343 - 10705309
Alignment:
Q  142 actgtctgcataatcagttttctcggcagttaact 176  Q
    |||||||||||||||||||||||||||||||||||    
T  10705343 actgtctgcataatcagttttctcggcagttaact 10705309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47741995 - 47742043
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacg 49  Q
    ||||| ||||||||| ||| ||||||||||||| |||||||||||||||    
T  47741995 ttgagcattttaatccgttcattttttggtttttttatgggtatctacg 47742043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 45763657 - 45763720
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  45763657 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 45763720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 15059896 - 15059945
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  15059896 ttatgggtatctacgtgagttacgtagaaccatgtcatgggaatcctcgg 15059945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 30786802 - 30786863
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 82  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||    
T  30786802 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctc 30786863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 40928930 - 40928967
Alignment:
Q  142 actgtctgcataatcagtttt-ctcggcagttaactgc 178  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  40928930 actgtctgcataatcagttttcctcggcagttaactgc 40928967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 5555 - 5616
Alignment:
Q  22 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  5555 ttttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcg 5616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 15940 - 16017
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  15940 attttaatccgttcattttttgattttgttatgggtatctacgtcagttacgtagaactatgtcatgggaaacttcgg 16017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 13174101 - 13174205
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagtt-acgtagaactttatcatgggaaacctcggaagtaaggcaccgagaaatac 105  Q
    ||||||||| ||| ||||||||| |||||||||||| | |||||||||| |||||||||| ||||||||||| |||||| ||||||| ||| || |||||    
T  13174101 attttaatccgttcattttttggctttgttatgggtttttacgtcagtttacgtagaactctatcatgggaatcctcggtagtaaggtaccaaggaatac 13174200  T
Q  106 ttgtg 110  Q
    |||||    
T  13174201 ttgtg 13174205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 21944192 - 21944116
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaa 77  Q
    ||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||  |||||||||||    
T  21944192 ttgagcattttaatcggtttattttttggatttgttatgcgtttctacgtcagttacgtagaaccctatcatgggaa 21944116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 8459914 - 8459831
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| | | |||| |||||||||||    
T  8459914 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgtctgttacgtagaattctgtcataggaaacctcgg 8459831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 36076370 - 36076295
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 82  Q
    |||||||||  || |||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||    
T  36076370 attttaatccattcattttttgattttgttatgggtatctacgtcagttacgtagaactctgtcatggaaaacctc 36076295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 4516265 - 4516373
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatgggaaacctcggaagtaaggcaccgag 99  Q
    ||||| ||||||||| ||| ||||||||| |||||||||||| | ||||| || |||||||||||| | |||||| ||||||||| ||||||| ||| ||    
T  4516265 ttgagcattttaatccgttcattttttggctttgttatgggtttttacgttagtttacgtagaactctgtcatggaaaacctcggtagtaaggtaccaag 4516364  T
Q  100 aaatacttg 108  Q
     ||||||||    
T  4516365 gaatacttg 4516373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19498927 - 19498845
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||||||||||||||| |||| ||||||| | ||||||||||||||| |||||| | ||||||||||| ||||    
T  19498927 ttgagcattttaatcggtttatttttttgtttggttatggat-tctacgtcagttacgcagaactatgtcatgggaaacttcgg 19498845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 22345517 - 22345595
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaac 79  Q
    ||||| ||||||||  ||| |||||||| ||||||||||||||| |||||||||||||||||||| | |||||| ||||    
T  22345517 ttgagcattttaattcgttcattttttgattttgttatgggtatttacgtcagttacgtagaactctgtcatggaaaac 22345595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 37015156 - 37015233
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||||| |||||||||| ||||||||||||||||||||   | ||||||||| ||||||    
T  37015156 attttattcgattgattttttggttatgttatgggtttctacgtcagttacgtagaatcctgtcatgggaatcctcgg 37015233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 50117584 - 50117527
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaac 64  Q
    |||||| ||| || ||||||||||| |||||||||| |||||||||||||||||||||    
T  50117584 attttattcgattgattttttggttatgttatgggtttctacgtcagttacgtagaac 50117527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 23914094 - 23914164
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaa 77  Q
    |||||| ||| || ||||||||| | | ||||||||||||||||||||||||||||||  | |||||||||    
T  23914094 attttattcgattgattttttgggtattttatgggtatctacgtcagttacgtagaaccctgtcatgggaa 23914164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 29356502 - 29356425
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||| | | ||||||||||||||||||||| ||||||||  | ||||||||| ||||||    
T  29356502 attttattcgattgattttttgggtgttttatgggtatctacgtcagttgcgtagaaccctgtcatgggaatcctcgg 29356425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 3948258 - 3948195
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  3948258 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 3948195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7980957 - 7980846
Alignment:
Q  1 ttgagaattttaatcggtttatttttt-ggttttgttatgggtatctacgtcagtt-acgtagaactttatcatgggaaacctcggaagtaaggcaccga 98  Q
    ||||| ||||||||| ||| ||||||| || |||||||| | | | |||||||||| ||||| |||| | ||||||||||| |||| ||||||| || ||    
T  7980957 ttgagcattttaatccgttcatttttttggctttgttatcgatttttacgtcagtttacgtataactctgtcatgggaaacttcggtagtaaggtactga 7980858  T
Q  99 gaaatacttgtg 110  Q
    | ||||||||||    
T  7980857 ggaatacttgtg 7980846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 20349708 - 20349771
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  20349708 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 20349771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 38775922 - 38775859
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  38775922 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 38775859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 30910007 - 30910045
Alignment:
Q  143 ctgtctgcataatcagtttt-ctcggcagttaactgcag 180  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  30910007 ctgtctgcataatcagttttcctcggcagttaactgcag 30910045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 36072464 - 36072430
Alignment:
Q  142 actgtctgcataatcagttttctcggcagttaact 176  Q
    ||||||||||||||||||||| |||||||||||||    
T  36072464 actgtctgcataatcagttttttcggcagttaact 36072430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 44465852 - 44465898
Alignment:
Q  38 tgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||||||||||||||  | ||||||||| ||||||    
T  44465852 tgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 44465898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 6561959 - 6561910
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  6561959 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 6561910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 13629685 - 13629734
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  13629685 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 13629734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 22398086 - 22398135
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  22398086 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 22398135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 29352329 - 29352256
Alignment:
Q  142 actgtctgcataatcagtttt-ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccga 214  Q
    ||||||||||||||||||||| ||||||||||||||| || ||  |||  ||||  || |||||||||||||||    
T  29352329 actgtctgcataatcagttttcctcggcagttaactggagccggatttcaaattcctcgacaattaactgccga 29352256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 36908626 - 36908573
Alignment:
Q  163 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    |||||||||||||||||| || |||| ||||| ||| ||| |||||||||||||    
T  36908626 ctcggcagttaactgcagccggtttttgaattcttcgacagttaactgccgagg 36908573  T

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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 31098749 - 31098666
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||| | | ||| ||||||||||    
T  31098749 ttgagcattttaatctgttaattttttgattttgttatgggtatctacgtcagttacgtagaactctgttatgcgaaacctcgg 31098666  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 33993537 - 33993620
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||  |||||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  33993537 ttgagcattttaatccgtacattttttggtcttgttatgggtatctacgtcagttatgtagaactttgtcacgggaaacctcgg 33993620  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 4204025 - 4203943
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||  | ||| |||||||||||    
T  4204025 ttgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacatagaaccatgtcaagggaaacctcg 4203943  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28387526 - 28387609
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| ||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  28387526 ttgagcattttaatccgttcattttttggttattttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 28387609  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 27867662 - 27867579
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||| |||||| ||| || ||||||||| | | ||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  27867662 ttgagcattttattcgattgattttttgggtgttttatgggtatctacgtcagttacgtagaaccctatcatgggaatcctcgg 27867579  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 30354205 - 30354149
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaac 64  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  30354205 attttaatcagtttattttttggttt-gttatgggtttctacgtcagttacgtagaac 30354149  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 34123730 - 34123653
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||||| |||||||||| |||||||||||||||||||||  | ||||||||| ||||||    
T  34123730 attttattcgattgattttttggttatgttatgggtttctacgtcagttacgtagaacactgtcatgggaatcctcgg 34123653  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 13567911 - 13567834
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  13567911 attttattcgattgattttttgggtgttttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 13567834  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 25896892 - 25896815
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  25896892 attttattcgattgattttttgggtattttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 25896815  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 7021694 - 7021618
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    |||||| ||| || ||||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| |||||    
T  7021694 attttattcgattgattttttgggtgttttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcg 7021618  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 34078030 - 34078107
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||| | | ||||||||||||| ||||||||||||||||  | ||||||||| ||||||    
T  34078030 attttattcgattgattttttggatgttttatgggtatctatgtcagttacgtagaaccctgtcatgggaatcctcgg 34078107  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 18538147 - 18538071
Alignment:
Q  1 ttgagaattttaatcggtttattttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatggga 76  Q
    ||||| |||||||||  || ||||||||| |||||||||||| | |||||||| |||||||||||| | ||||||||    
T  18538147 ttgagcattttaatccattcattttttggctttgttatgggtttttacgtcagtttacgtagaactctgtcatggga 18538071  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 37820677 - 37820614
Alignment:
Q  21 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  37820677 attttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 37820614  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 1039782 - 1039819
Alignment:
Q  142 actgtctgcataatcagtttt-ctcggcagttaactgc 178  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  1039782 actgtctgcataatcagttttcctcggcagttaactgc 1039819  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 11029104 - 11029067
Alignment:
Q  142 actgtctgcataatcagtttt-ctcggcagttaactgc 178  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11029104 actgtctgcataatcagttttcctcggcagttaactgc 11029067  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 11033244 - 11033195
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  11033244 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 11033195  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 17965897 - 17965844
Alignment:
Q  163 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    |||||||||||||||||||||| |||  ||||  || |||||||||||||||||    
T  17965897 ctcggcagttaactgcagtcgaatttttaattcctcgacaattaactgccgagg 17965844  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 18538360 - 18538413
Alignment:
Q  163 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    |||||||||||||||||| || |||| |||||  || |||||||||||||||||    
T  18538360 ctcggcagttaactgcagccggtttttgaattcctcgacaattaactgccgagg 18538413  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 38855811 - 38855774
Alignment:
Q  142 actgtctgcataatcagtttt-ctcggcagttaactgc 178  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  38855811 actgtctgcataatcagttttcctcggcagttaactgc 38855774  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 38859983 - 38859934
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  38859983 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 38859934  T

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Target: scaffold0038 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 50309 - 50385
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 83  Q
    |||||| ||| || ||||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| |||||    
T  50309 attttattcgattgattttttgggtgttttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcg 50385  T

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Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 11537 - 11612
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 82  Q
    |||||| ||| || ||||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| ||||    
T  11537 attttattcgattgattttttggctattttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctc 11612  T

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Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 4210 - 4133
Alignment:
Q  7 attttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||| ||| || ||||||||||| | |||||||| ||||||||||||||||||||   | ||||||||| ||||||    
T  4210 attttattcgtttgattttttggttattttatgggtttctacgtcagttacgtagaatcctgtcatgggaatcctcgg 4133  T

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Target: scaffold0618 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 3933 - 3880
Alignment:
Q  163 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 216  Q
    |||||||||||||||||| ||||||| |||||  || ||| |||||||||||||    
T  3933 ctcggcagttaactgcagccgatttttgaattcctcgacagttaactgccgagg 3880  T

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Target: scaffold0494 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 1150 - 1199
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  1150 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 1199  T

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Target: scaffold0494; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 5304 - 5341
Alignment:
Q  142 actgtctgcataatcagtttt-ctcggcagttaactgc 178  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  5304 actgtctgcataatcagttttcctcggcagttaactgc 5341  T

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Target: scaffold0341 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 17149 - 17100
Alignment:
Q  35 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 84  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  17149 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 17100  T

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