View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2799_low_14 (Length: 236)
Name: NF2799_low_14
Description: NF2799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2799_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 34814621 - 34814422
Alignment:
| Q |
18 |
atgaatccaaaattgcaagtacacttgaaaggattgctaaactaatgcaaactccgaaactgaaacttggtacaattacaacctttgcttgcctcttaga |
117 |
Q |
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| T |
34814621 |
atgaatccaaaattgcaagtacacttgaaaggattgctgaactactgcaaactccgaaactgaaacttggtacaattacaacctttgtttgcctcttaga |
34814522 |
T |
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| Q |
118 |
tatctatttttctatgatcaataaggagacatgttctatcttgtactatatgtgggatccttcaattgacaaactaaggactaacttcagcaatgtactt |
217 |
Q |
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| T |
34814521 |
tatctatttt--ttttatcaataaggagacatgttctatcttgtactatatgtgggatccttcaattgacaaactaaggactaacttcagcaatgtactt |
34814424 |
T |
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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 34815606 - 34815411
Alignment:
| Q |
15 |
gagatgaatccaaaattgcaagtacacttgaaaggattgctaaactaatgcaaactccgaaactgaaacttggtacaattacaacctttgcttgcctctt |
114 |
Q |
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||||||||||||||| || ||||| ||||||||||||||||| |||| |||||||| ||| ||||||||||||||||| || ||| | ||| ||||| |
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| T |
34815606 |
gagatgaatccaaaactgttggtacatttgaaaggattgctaaattaat-caaactcctaaagtgaaacttggtacaatttcatcctctatttgactctt |
34815508 |
T |
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| Q |
115 |
agatatctatttttctatgatcaataaggagacatgttctatc--ttgtactatatgtgggatccttcaattgacaaactaaggactaacttcagcaatg |
212 |
Q |
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| T |
34815507 |
agatatcta-ttttct---acctataaggagacatattctatcttttgagatatgtgtgggattcttcaattgacaaactaaggactaacttcagcaatg |
34815412 |
T |
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