View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2799_low_3 (Length: 458)
Name: NF2799_low_3
Description: NF2799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2799_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 373
Target Start/End: Complemental strand, 1364506 - 1364142
Alignment:
| Q |
11 |
catcatcacatgaaatcc-tcaaccaccagaaggaacaagaaggg-gaaaggggatctccttgtcgcagacctctagctaaagtaaatttctcagtggga |
108 |
Q |
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| T |
1364506 |
catcatcacatgaaacccctcaaccaccagaaggaacaagaaaggtgaaaggggatctccctgtcgcagacctctagctaaagtgaatttctcagtggga |
1364407 |
T |
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| Q |
109 |
ctaccattcaataaaacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatcca |
208 |
Q |
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| T |
1364406 |
ctaccattcaataaaacagtcgcagtagcagtcccaacacattttttcattcatttcctccaaatagtcggaaacaacatcgtaaccataatatcatcca |
1364307 |
T |
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| Q |
209 |
aatatttccaatcaactgaattgtatgccttcttaaagtcgactttaaataaaagcaattcnnnnnnnnnnnnnnnagattcatcaactacctaattagc |
308 |
Q |
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| T |
1364306 |
aatatttccaatcaactgaattgtatgctttcttaaagtcgactttaaataaaagcaattcttttttcaattttttagattcatcaactacctaattagc |
1364207 |
T |
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| Q |
309 |
aaccagaataccatctaaaatttgtcttcctttaataaatgctaaggacgcttttttgctttcct |
373 |
Q |
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| T |
1364206 |
aaccagaataccatctaaaatttgtattcctttaataaatgctaagggcacttttttgctttcct |
1364142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 1364106 - 1364049
Alignment:
| Q |
383 |
ggacacttttttgctattgtgcacatgtcaaaataaatcaagtttttatggatgtatt |
440 |
Q |
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| T |
1364106 |
ggacacttttttgctattgtccacatgtcaaaacaaatcaagtttttatggatgtatt |
1364049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 17952062 - 17952169
Alignment:
| Q |
112 |
ccattcaataaaacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaat |
211 |
Q |
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| T |
17952062 |
ccattcactagaatagccgcaatagttgtgccaacacattctttcatccatttcctccaaagattcggaaacaccattttacctataacaccatccaaat |
17952161 |
T |
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| Q |
212 |
atttccaa |
219 |
Q |
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|||||||| |
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| T |
17952162 |
atttccaa |
17952169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 32808864 - 32808966
Alignment:
| Q |
139 |
gtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaattgtatgcct |
238 |
Q |
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| T |
32808864 |
gtcccaatacattcttttatccacttacgccaaagtgtcggaaaccccattttcaacataacatcatccaaatagctccaatcaattgagttgtatgctt |
32808963 |
T |
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| Q |
239 |
tct |
241 |
Q |
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||| |
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| T |
32808964 |
tct |
32808966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 15106505 - 15106368
Alignment:
| Q |
123 |
aacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatca |
222 |
Q |
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|||||||||| |||| || ||||||||||||||||| |||||||||||| | ||||||| ||| || ||| | |||||||||| ||||| ||||| |
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| T |
15106505 |
aacagccgcattagccgtgccaacacattctttcatccatttcctccaatgattcggaaatggcatattgcccacaccatcatccaagtattttcaatct |
15106406 |
T |
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| Q |
223 |
actgaattgtatgccttcttaaagtcgactttaaataa |
260 |
Q |
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| T |
15106405 |
acagaatcgtatgccttttcaaagtcaaccttaaataa |
15106368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 20691226 - 20691162
Alignment:
| Q |
145 |
acacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaa |
209 |
Q |
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| T |
20691226 |
acacattctttcatccatttcctccaaagagtcagaaatgacattttacccataacgtcatccaa |
20691162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 21580459 - 21580552
Alignment:
| Q |
130 |
gcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaa |
223 |
Q |
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| T |
21580459 |
gcagaagcagtcccaacacactccttaatccatttgcgccacaaagtcggaaaccccatcttcatcataacttcctccaaataattccaatcaa |
21580552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 23877346 - 23877277
Alignment:
| Q |
160 |
catttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaat |
229 |
Q |
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| T |
23877346 |
catttcctccaaagagtgggaaaagacattttctccatcacatcatccaaatatttccattcaacggaat |
23877277 |
T |
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