View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2799_low_4 (Length: 452)
Name: NF2799_low_4
Description: NF2799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2799_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 438
Target Start/End: Original strand, 6917832 - 6918264
Alignment:
| Q |
12 |
catcatcaggtgaattatctgatgccatttgaggatctaaatggggtgcatcagttgttttgatagggctgttttttcgaggatggttgtcggagttgta |
111 |
Q |
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| T |
6917832 |
catcataaggtgaattatctgatgccatttgaggatctaaatggggtgcatcagttgttttgatagggctgttttttcgaggatggttgtcggagttgta |
6917931 |
T |
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| Q |
112 |
accgtcaaattcgtcttttttcaatttaccaaatcttctaccatgaacgcttccttcatccaagaatgtatgtccttttcttgatgaccctgtcattgct |
211 |
Q |
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| T |
6917932 |
accgtcaaattcgtcttttttcaatttgccaaatcttctaccatgaacgcttccttcatccaagaatgtatgtccttttcttgatgaccctgtcattgct |
6918031 |
T |
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| Q |
212 |
aataatgttgattagtta-ttattccttacttcctctcatgcaaagttacataaaagaaatgataaattatatttattgtagctttggagctggatggaa |
310 |
Q |
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| T |
6918032 |
aataatgttgattagttatttattccttacttcctctcatgcaaagttacataaaagaaatgataaattatatttattgtagctttggagctggatggaa |
6918131 |
T |
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| Q |
311 |
taaagaggataaaggaaaagaagagaaattaaggttttgtttgttttacataacatgaaaggaaggttgagaatagacaatatggtttggtttgg----- |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6918132 |
taaagaggataaaggaaaagaagagaaattaaggttttgtttgttttacataacatgaaaggaaggttgagaatagacaatatggtttggtttggtttga |
6918231 |
T |
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| Q |
406 |
tgtaagaaatgaatgagagacaaggtggtttgt |
438 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
6918232 |
tgtaagaaatgaatgacagacaaggtggtttgt |
6918264 |
T |
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